BAC Information

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BAC

Clone NameMSMg01-341N06
Chromosome16 (Build37)
Map Location 61,508,514 - 61,508,884
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, EG668168, LOC668170, LOC100043524, LOC668183
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341N06.T7 (MSMg01no341_n06.b1)MSMg01-341N06.TJ (MSMg01no341_n06.g1)
ACCAG455527AG455528
length766770
length of high quality
(start - end)
471 (44 - 514)370 (75 - 444)
definitionCHROMAT_FILE: MSMg01no341_n06.b1 PHD_FILE: MSMg01no341_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:10 2005CHROMAT_FILE: MSMg01no341_n06.g1 PHD_FILE: MSMg01no341_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTACCTCTGTACCCCAATTTTAATAGGGTTACTCAGTTCTCT
ATTAGTCCAAACAGAAGGTTCTTAGTTACTTCATAAAAGTCATGCATGAA
AGGACTGCACTAGTGGTTTCATGCTAACTGGCAAGTTGGTGTTGTAGCAC
TTAGGGTCCACTTCTGGCTCAGACCTGTGCTGACTTTCTCCTACTGGGTC
CCAAATAACACCTTTTGAGCCTATGATAGGTAACTAGTAGTGAAGAAGTT
ACCATGTCAATTGCAACCTATTTTTCTATATTCTACAATAAAAATTTAAT
AAAGGCTCAACATTTGGTTATATTGGGCAACTAACAATAATGGTAATAAC
CTACATAGTTTGAAGAAGAGTCTTCAGTCAGTGCTCTGTAACTAAGAATT
TATAGGAAATACAGCTTGGTGACATGGATATTTTCCTTTCGAAAATGCAT
GCCTTCTGGAAGCAATATTTTTTTCCTGTTTCTTTTGCCACTTGAATATC
ATTGCTAGGATGCATTAATACTTTCATTAAAACAGCTGTATGGACCAACT
TCCATGGTTTTAAAAAATTTACTAATTTTCTAATTTGTTCTTTCCTGCCT
GGCTTTTGCCCCTTATTTAATAATAATTAACCATTTTTGCGCCCCTTTTT
AATTTTTTCCGGTTTTATCAACCCTACTTGTTTTTATCCCACAAATTTCT
TTCTTTTAATTTCTCC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGTGGAATATGTAACAATGAAGAAA
TTTTGGTGCCTAGTAATGTCTAGTGTAATTGAATGTTTTCCTAAATATTT
AAAACAAGATCCATGTCCTGATGTAATTTACTAATCTAGCATTTCTTGAA
ATAATGACAACTTTATTTATCACAAGGGTATTCTATGTACACAAACTGAA
GGAATTTTTACTTATTGCTTTGTGTTGGATTATTTTGGTTGGATAATACA
CTTGGATATTTATTATTTATCCTGTCATGAAATGTGAATATTAAAATAAC
ATGCATTAATTAGCAAACTATAAGGACATTGCATAGAAACAGATGCCAAA
TGGTTTTGTTTCTTAAGCCATCATGTTGGAGTGTTTTGTATTAATTTTAC
ATTTGCCCGATCCCTTTTTATCTAAGGTGGAGAATTTCTAATTCAATACC
CGTTTGACCCGAAATCCACCATCCTTTTTTTTTTTCCCACTCCCCCTTCT
CTTTACTCCTCCCCTCTCTACTCTCTTATTCGATACCTTCATTAATTTTC
CTTTTTTCCCCCTCTTTTTTTTCCCCCCTTCCTTTTTTTTTTTTTTTTTT
CCCTTTTTTTTTTTTCCTCTTTTCCCCCCTTTCCCCCTCTTACCTCCCAT
TCTTCATCCTCCTAACTATATACCTATTTTTCACCTTTCCCCTCCCCCCT
TCACCTCTCTCTCCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_n06.g1 MSMg01no341_n06.g1 CHROMAT_FILE:
MSMg01no341_n06.g1 PHD_FILE: MSMg01no341_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:10 2005
         (370 letters)



>mm_chr16_61508314_61509085
          Length = 772

 Score =  675 bits (349), Expect = 0.0
 Identities = 365/371 (98%), Gaps = 2/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtggaatatgtaacaatgaagaaattttggtgcctagtaatgtctagtgtaattgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtggaatatgtaacaatgaagaaattttggtgcctagtaatgtctagtgtaattgaat 260

                                                                       
Query: 61  gttttcctaaatatttaaaacaagatccatgtcctgatgtaatttactaatctagcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttcctaaatatttaaaacaagatccatgtcctgatgtaatttactaatctagcattt 320

                                                                       
Query: 121 cttgaaataatgacaactttatttatcacaagggtattctatgtacacaaactgaaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgaaataatgacaactttatttatcacaagggtattctatgtacacaaactgaaggaa 380

                                                                       
Query: 181 tttttacttattgctttgtgttggattattttggttggataatacacttggatatttatt 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttacttattgcattgtgttggattattttggttggataatacacttggatatttatt 440

                                                                       
Query: 241 atttatcctgtcatgaaatgtgaatattaaaataacatgcattaattagcaaactataag 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 atttatcctgtcatgaaacgtgaatattaaaataacatgcattaattagcaaactataaa 500

                                                                       
Query: 301 gacattgcatagaaacagatgccaaatggtttt--gtttcttaagccatcatgttggagt 358
           |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 501 gacattacatagaaacagatgccaaatggttttatgtttcttaagccatcatgttggagt 560

                      
Query: 359 gttttgtatta 369
           |||||||||||
Sbjct: 561 gttttgtatta 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 772
Length adjustment: 9
Effective length of query: 361
Effective length of database: 763
Effective search space:   275443
Effective search space used:   275443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)