BAC Information

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BAC

Clone NameMSMg01-341N22
Chromosome16 (Build37)
Map Location 17,548,668 - 17,725,928
singlet/doubletdoublet
Overlap gene4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8
Upstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7
Downstream geneEG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341N22.T7 (MSMg01no341_n22.b1)MSMg01-341N22.TJ (MSMg01no341_n22.g1)
ACCAG455559AG455560
length802784
length of high quality
(start - end)		420 (40 - 459)374 (70 - 443)
definitionCHROMAT_FILE: MSMg01no341_n22.b1 PHD_FILE: MSMg01no341_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:13 2005CHROMAT_FILE: MSMg01no341_n22.g1 PHD_FILE: MSMg01no341_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,725,512 - 17,725,928)(17,548,668 - 17,549,041)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TAATACCCTAGGTGGGTGCCTGTGTAGCTACAAGTGGCAAACAGCCTGGA
CTCTACTGGGAATGGTCCTTTCCCCATCCCTTTGGTAGGAGCTTAACAAA
CATTAGGCGTTTTTCTTGTCTTATACGGCTAATGTGGGTCTGAATGTCGC
CTGGGAGGCATGCACCACGAACAAGAAGTCGTCTTCATTCTTCTCATATG
CCTTGGAGATAGTCTTACACATACTCACCACGCTGTGCCAGGTCACCACG
AGGAAGAAGGCTTGACTATCGTTGAGCTGTTACCGCCTTCTCTTTCTGGT
CATGAGCTTACCCATGTTGACGTGGTTGGGTTGATTTTGTCATGGACCGG
CAGCTGCCTTTTCTGTTTATAATGCACTATTGAAATCTTTATGGGTGCAA
GACATCTTCCACTCTCTGTGTGAAGCTTCCACCCTGTGTGGAGGTCTCTG
ACCATCTGGTTTGGGGAATCTAATATTTGGATTAAAGTGGCTGTACACCC
CCCCCCCTTTTTCCCACCCTTTTCTTTTTTCTCCTTCTTCTGCCCTCTCT
CTCTTCTTATCTTTCTGTTGGTCCCCCTCCTCTTTTCCTATACCCTCCCT
CTTTTCTCCCCTCTTTTGCCACTTTATCTTTTCCCCCTTTTTTTTCTTTT
ATTTTCTCCTTTCTTCTTCCCCTCTTTTTTTTTATCGCCTCTTTTTTATC
TGCGTTTTTTTTTTCTTTTTCCCTCTTCTTTTTTTGCCCCATACTTTTCC
CT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGCATCTGGGCAGAGCACTGTAACTAACT
CCCACTTCATCCCTCTAATATGGACATGTCAGTAGCTCACAGAGCCTCTG
GCAGCTCCCGGATGAGGCTAGCAAGAAGCTCTTACAGACACATCCAGCAG
TTCTAGGGCAGATGATTTGTTGTTCCGGACAGACTTAAGGAGGCCAACAC
AGCCGTCACTGCGAATAGGATTCTTGGAAATCTAAGGAAGATGCACACAA
TATATCACTTGACCTTTTATGACAGCACCCACAGTCCCAGCACTCAGGAG
GTAAGAACAGGAGGATTAACAGTTCCACACTAATTACCAAGTTAAGAGGC
CAGTCTAGGGGTTGGAGATGGTTCGGTGGCTAGGAACACTGGCTTCTCCT
CCCGAGAACCTGATTTCCGGTCCCAGCATCTACCAAGTGTGTTTAAATTG
TCTGGAACCCAAGCCTATGGCGATTTGAAACTTCTTTCTTCCCCCAGGTT
TTTTTTTTATCCCTGTCCACCCTCTCTTTCGCCTCTCGGTCCTTATGTTT
TATTGCGATTGTATCTAAAAATTTTCTTTATATACCTCATGTTCATATAC
CCTTCCTTTTCCTCTTTTTTGTACGCCCTTATTTTATACATATTTCCCCC
TGTACCCCCATTTCTTTACTTTTGTTTCCCTTTCTTTCCCTTCCTTTTTT
CCCCTTCCTTACCCTATACGCTCCTTACTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_n22.b1 MSMg01no341_n22.b1 CHROMAT_FILE:
MSMg01no341_n22.b1 PHD_FILE: MSMg01no341_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:13 2005
         (420 letters)



>mm_chr16_17725309_17726128
          Length = 820

 Score =  806 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctaataccctaggtgggtgcctgtgtagctacaagtggcaaacagcctggact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggaattcctaataccctaggtgggtgcctgtgtagctacaagtggcaaacagcctggact 561

                                                                       
Query: 64  ctactgggaatggtcctttccccatccctttggtaggagcttaacaaacattaggcgttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctactgggaatggtcctttccccatccctttggtaggagcttaacaaacattaggcgttt 501

                                                                       
Query: 124 ttcttgtcttatacggctaatgtgggtctgaatgtcgcctgggaggcatgcaccacgaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcttgtcttatacggctaatgtgggtctgaatgtcgcctgggaggcatgcaccacgaac 441

                                                                       
Query: 184 aagaagtcgtcttcattcttctcatatgccttggagatagtcttacacatactcaccacg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagaagtcgtcttcattcttctcatatgccttggagatagtcttacacatactcaccacg 381

                                                                       
Query: 244 ctgtgccaggtcaccacgaggaagaaggcttgactatcgttgagctgttaccgccttctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgtgccaggtcaccacgaggaagaaggcttgactatcgttgagctgttaccgccttctc 321

                                                                       
Query: 304 tttctggtcatgagcttacccatgttgacgtggttgggttgattttgtcatggaccggca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttctggtcatgagcttacccatgttgacgtggttgggttgattttgtcatggaccggca 261

                                                                    
Query: 364 gctgccttttctgtttataatgcactattgaaatctttatgggtgcaagacatcttc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctgccttttctgtttataatgcactattgaaatctttatgggtgcaagacatcttc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_n22.g1 MSMg01no341_n22.g1 CHROMAT_FILE:
MSMg01no341_n22.g1 PHD_FILE: MSMg01no341_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:14 2005
         (374 letters)



>mm_chr16_17548468_17549241
          Length = 774

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcatctgggcagagcactgtaactaactcccacttcatccctctaatatggacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcatctgggcagagcactgtaactaactcccacttcatccctctaatatggacatgt 260

                                                                       
Query: 61  cagtagctcacagagcctctggcagctcccggatgaggctagcaagaagctcttacagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtagctcacagagcctctggcagctcccggatgaggctagcaagaagctcttacagac 320

                                                                       
Query: 121 acatccagcagttctagggcagatgatttgttgttccggacagacttaaggaggccaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatccagcagttctagggcagatgatttgttgttccggacagacttaaggaggccaaca 380

                                                                       
Query: 181 cagccgtcactgcgaataggattcttggaaatctaaggaagatgcacacaatatatcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagccgtcactgcgaataggattcttggaaatctaaggaagatgcacacaatatatcact 440

                                                                       
Query: 241 tgaccttttatgacagcacccacagtcccagcactcaggaggtaagaacaggaggattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaccttttatgacagcacccacagtcccagcactcaggaggtaagaacaggaggattaa 500

                                                                       
Query: 301 cagttccacactaattaccaagttaagaggccagtctaggggttggagatggttcggtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagttccacactaattaccaagttaagaggccagtctaggggttggagatggttcggtgg 560

                         
Query: 361 ctaggaacactggc 374
           ||||||||||||||
Sbjct: 561 ctaggaacactggc 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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