BAC Information

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BAC

Clone NameMSMg01-342B06
Chromosome16 (Build37)
Map Location 26,965,583 - 26,966,054
singlet/doubletsinglet
Overlap geneGm606
Upstream geneLeprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneOstn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342B06.T7 (MSMg01no342_b06.b1)MSMg01-342B06.TJ (MSMg01no342_b06.g1)
ACCAG455716AG455717
length726735
length of high quality
(start - end)
433 (28 - 460)472 (65 - 536)
definitionCHROMAT_FILE: MSMg01no342_b06.b1 PHD_FILE: MSMg01no342_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:30 2005CHROMAT_FILE: MSMg01no342_b06.g1 PHD_FILE: MSMg01no342_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCATTTATTACG
CAAACGACCTGTAGGGCAAAAGATAAAAAAGAAAAATATCTAAATAAAAT
AAAATAAAAATGATAGATAAAATATCTGATTAATTCCTGTTGTCTACTCA
TTCTGGGTTCATACGTTTTGTTTTAGAGCTTTCAAGTGTGCTGTTAAATT
GCTAGTATACAATATCTCTAGTCTTCTTTATCTGAACAGACAAAAATACT
TATTTACTTATTTATTGGCTTTTAAAATAAATTTATTTCTTCCCTTTATA
ATTATATCACCATTCCTCTCTTCCCATTAGCCCATCATGCAAGTTTTCTC
CTATTCCCCACCCCACCCCCTTCTTCTTCTTGTCACATCAAGTCTCTGTG
GGATTAGGTACATCCTCTCCAACTGAGGCCAGACAAGACTGTCCATTTAG
CAGTGTGTACGGGTGGGGGTTGTTTTTCCTCTTTTCTTCTCTATTCTCAA
ATTTTCTTTTTTTTTCTTACCCCCCCCTCTCCCTACTATTTATTTCCCCT
TCTACTCACACCGGTCAATTTTTTTTTTTTCCCATTTTTCCCCTTTTATT
CACCTTATATCCCCCCCCTTTCTTATCTTTTTATTATTCCCTTTCTTTTT
TGCCTTCCCCCTTTTTTATTATCCCCTTTTTTTTCTCTCTCCGTTCTCTC
CTCTCCTCAACCTTATCTTATTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTACAATATCTCCTTTTCTGTAGAGGTTCTGCTGT
GAAAAGGCCCATTCTCCCAGAGAAGCAGAGGAGTAGAACTTACCCAGCAC
TTGTGGTGCTTGCTGGAGCTCAGTGTTGTCCAGGAGACCAGCAGCCCAGA
AAGAGACCCAAGTCTCCTTGGAAACGTCAACACCAGATTCTGACGTTGTA
GTGGAATACGGGCAATTATAACTCTGGCCTCCTACAAAATACTGATCTTG
GCAAGGCAGAATGGTGTTCTGTGAAATTCAGTATCATAGGGGTGTGAGAG
AAGCCATGATGGCAGGCGGGAGAGGGAGAAAGTAGGAGAAATATAGAGAA
ATTATATGTGGTGAAGCAAATAAACAATGAAGGTGATAACTACAAGTCCA
GATACATATTTGAATGATTCGATTATAATTGCTAATAAGAAGCAGGCTCT
TTGAGTTACCCTGTACTACCTAAGGTCTTTTCACAAAATAAGTAGTATTG
GATGGGCCAGGTTAGTACACATTAGAAAAATTTTTCCTACTGTAGTGTTC
CGGTCCACTATTAGCTACTCCGATATTTAATAAATAGAATTTGGCCTTTC
TTGATTTATAAATATTTCAATCTTTCCCGGTACCCCGCTTGAGAATACTT
CGAATTTTGTTTTTTTTACTCCCTGTACCTATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_b06.g1 MSMg01no342_b06.g1 CHROMAT_FILE:
MSMg01no342_b06.g1 PHD_FILE: MSMg01no342_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:30 2005
         (472 letters)



>mm_chr16_26965383_26966254
          Length = 872

 Score =  851 bits (440), Expect = 0.0
 Identities = 464/472 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctacaatatctccttttctgtagaggttctgctgtgaaaaggcccattctcccagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctacaatatctccttttctgtagaggttctgctgtgaaaaggcccattctcccagagaa 260

                                                                       
Query: 61  gcagaggagtagaacttacccagcacttgtggtgcttgctggagctcagtgttgtccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaggagtagaacttacccagcacttgtggtgcttgctggagctcagtgttgtccagg 320

                                                                       
Query: 121 agaccagcagcccagaaagagacccaagtctccttggaaacgtcaacaccagattctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaccagcagcccagaaagagacccaagtctccttggaaacgtcaacaccagattctgac 380

                                                                       
Query: 181 gttgtagtggaatacgggcaattataactctggcctcctacaaaatactgatcttggcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgtagtggaatacgggcaattataactctggcctcctacaaaatactgatcttggcaa 440

                                                                       
Query: 241 ggcagaatggtgttctgtgaaattcagtatcataggggtgtgagagaagccatgatggca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagaatgctgttctgtgaaattcagtatcataggggtgtgagagaagccatgatggca 500

                                                                       
Query: 301 ggcgggagagggagaaagtaggagaaatatagagaaattatatgtggtgaagcaaataaa 360
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgggaaagggagaaagtaggagaaatatagagaaattatatgtggtgaagcaaataaa 560

                                                                       
Query: 361 caatgaaggtgataactacaagtccagatacatatttgaatgattcgattataattgcta 420
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 caatgaagatgataactacaagtccagatacatatttgaatggttcgattataattgcta 620

                                                               
Query: 421 ataagaagcaggctctttgagttaccctgtactacctaaggtcttttcacaa 472
           | |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 aaaagaagtaggctctttgagttaccctgtactacctaaggccttttcacaa 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)