BAC Information

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BAC

Clone NameMSMg01-342I07
Chromosome16 (Build37)
Map Location 26,535,701 - 26,536,064
singlet/doubletsinglet
Overlap genenone
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
Downstream geneIl1rap, Gm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342I07.T7 (MSMg01no342_i07.b1)MSMg01-342I07.TJ (MSMg01no342_i07.g1)
ACCAG456051AG456052
length783724
length of high quality
(start - end)
65 (65 - 129)436 (67 - 502)
definitionCHROMAT_FILE: MSMg01no342_i07.b1 PHD_FILE: MSMg01no342_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:03 2005CHROMAT_FILE: MSMg01no342_i07.g1 PHD_FILE: MSMg01no342_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTAAACGACTCACTATTTCTAGAGAATCCGCGGAATTCTACTAAT
ATCAATAAACCACCAAGTGGTGGAACTGTCATTACCAATATGGAAGCTGT
AACCCAGGTAGGTAAAGTACTTTGTGTCAAAANTTCTTAAAAAAAACATT
GNNNCTGGTTTAACCTCATTAACCGTGGCAAAGGAGCTATGGTTACTGCG
CTGAGGGGAAAAAATTTTTNCCTTTTTCCCTCGTTATTAATTCCTCCTTT
TANANNNAACCCCAAAAACAAAAACCCCCCTCCCCAAAGAAAAAAAAAAC
CCTTTTTTTTTTNNNNNCTNCNNAANNTNNCTTTCCCCCCAAAAAAAAAA
TATANCACTCCTTCAAAAAANTCCCCAAATTTTAATATTCCTCCAAAAAA
AAACCCCCCCAAAATCTTTTTTTTTNNCCCCCCCCATANCNNNNTAATAC
CCCCCTTTTTTTTAAATAAAAAATCCCACCACCCCNCCTCCCCCCCCCTN
CCCCATACCCTTACCCCCTTTCCCCCCTTCCCCCCCCAATAACCCCCCAA
TATACCCCTTTCTCCCCCCNTTTCCTTTTCCCATACNNNNNNTCTCAATN
CCTATTTTTTTTAAATTACACCCANCATTCTTTTCCTCCTTTTTACNACC
CACCTTNNNNCAATCNTTTTTTTTTCACATTCCTTCACCCATTCTTTTCT
TTTTACACACCCTCTTTTTATTNAATACACCNNACTNTATTTCACTCCCC
TTCCCCATTTCTTTATATACCCTCTTCTCCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAACTATGCAAAATCCACAGACAGGAGCTGATGC
TGAGACCACGGGGAAAGTGCTGCTTACTGCCTTTCTCTTCATGACTTGCT
CAGACTGCTTTTTTATAAAACTCAGGAACACAAACCTATGGGTTGCCCCA
CCCACAATGGGATAGGACCTCGTTTAATAATCATTAATTATGAATGTGTC
CTACAGGCTTACAGATCTTACGGATGCATTTTCTCAATTGAGCCTTCCTT
CACTTTGATGATTATAGTTTTATTTAACTTAACGTAAACCAGTCTATAAA
TACACTGTCTACAAATGTCCAATAGCATATGAAAAAGTGGTTAATAGCTT
TAGTTGTTACAGTAATGAAATTTTTAAAAAATGTAGTATGTAGACACACG
TCCTTTCAAACAGTTGATCATTATGCAGCTGCATGCCTCAGATTTTGACA
AAAATATTGATCAGTGTGATTAGTCATCTATTTTCTAGCGATGATGAAAA
ATGTTAGGAAATAATTTTTCCTGTACCATTAAAACCAAACCTCCCTGTCA
CATATTCCTTCCACGCTAGGCTATTTTGTTAAAAATTCATATAAACATGT
GTTCCCTATCTCCACCTTGGTTTTCACATGTTTAAGGTAAGTTTTACTCT
CCACCCCTTTATTATGTGTCGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_i07.g1 MSMg01no342_i07.g1 CHROMAT_FILE:
MSMg01no342_i07.g1 PHD_FILE: MSMg01no342_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:03 2005
         (436 letters)



>mm_chr16_26535229_26536064
          Length = 836

 Score =  598 bits (309), Expect = e-175
 Identities = 351/365 (96%), Gaps = 2/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 73  tcatgacttgctcagactgcttttttataaaactcaggaacacaaacctatgggttgccc 132
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 836 tcatgacttgctcagactgcttttttataaaactcaggaccacaagcctatgggttgccc 777

                                                                       
Query: 133 cacccacaatgggataggacctcgtttaataatcattaattatgaatgtgtcctacaggc 192
           ||||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||
Sbjct: 776 cacccacaatgggataggacctcctttaatgattattaattaagaatgtgtcctacaggc 717

                                                                       
Query: 193 ttacagatcttacggatgcattttctcaattgagccttccttcactttgatgattatagt 252
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttacagatcttacagatacattttctcaattgagccttccttcactttgatgattatagt 657

                                                                       
Query: 253 tt-tatttaacttaacgtaaaccagtctataaatacactgtctacaaatgtccaatagca 311
           || | ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 656 ttct-tttaacttaacataaaccagtctataaatacactgtctacaaatggccaatagca 598

                                                                       
Query: 312 tatgaaaaagtggttaatagctttagttgttacagtaatgaaatttttaaaaaatgtagt 371
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tatgaaaaggtggttaatagctttagttgttacagtaatgaaatttttaaaaaatgtagt 538

                                                                       
Query: 372 atgtagacacacgtcctttcaaacagttgatcattatgcagctgcatgcctcagattttg 431
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgtagacacacgttctttcaaacagttgatcattatgcagctgcatgcctcagattttg 478

                
Query: 432 acaaa 436
           |||||
Sbjct: 477 acaaa 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)