BAC Information

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BAC

Clone NameMSMg01-343D09
Chromosome16 (Build37)
Map Location 66,632,872 - 66,633,278
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2, 9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343D09.T7 (MSMg01no343_d09.b1)MSMg01-343D09.TJ (MSMg01no343_d09.g1)
ACCAG456576AG456577
length771800
length of high quality
(start - end)		411 (38 - 448)123 (69 - 191)
definitionCHROMAT_FILE: MSMg01no343_d09.b1 PHD_FILE: MSMg01no343_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:57 2005CHROMAT_FILE: MSMg01no343_d09.g1 PHD_FILE: MSMg01no343_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
CTGAAGCACACTTTATATCTTATAATGTTTTAAGCACTTCAAGTGAAATT
ACACAAAATGTCTGGCAGACAAAGTTGGTGGCATTTTTCCTCCCAACAAA
ATTAATCATTGCCTCCAGGACTAAGTCAGACTTGTCTGAATTCAATTTGA
CCACGCAGATTTTACAACTCACTTAAACTATTTTGCTTTTGGCAAAGAAT
CTCTGTGTCTGCCACTGCTGTAAACCTGCGCTTGGCATCGTTTGAACTAT
GAATATGGACACAATAACAAGAGGATCTGCCTAAGAAGCTAATGGCTTTT
TCCTCGGTCTTTCTCTCACCAGTAATAGGCTAGCAGATTTTGTGTAATTT
TTACCTGGGGAGAGAAATGTTAGAAATATGTTTTTTGAAGTTAAAAATAA
AAGATCATCATTTTCTCTACAGGAATAGATGAAAGGACAAATTACAAGCT
ACCAGGACTGCTGAGAATATCCTAGAGCCACCATGCATTTTGTTAAAAGA
AAGAAAAGGGGTGGGACAAAAAAGTTCCAAAATTAAAAAACTCGATATAG
TTACATAACCTTTCTTAAGTTTCAAACCTGCCCCCGAAAAAATTTTTTGA
ATTAAAACAAATCCTAAAATTTTTACAAATTTTAATTACCTTATTACTAC
CACTTTTTTAAAAACCCTAACTATATAGAAATCCATTAGCTGCGTTTATT
TCCCCACACTTTCGTTATCTG

AGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGG
GGTTATTTGATTTTCTGGAGTCCATCCCCTTGAGTTTTATATATATATAT
ATATATATATATATATATATATATATATATATATATATATAGAGAGAGAG
AGAGAGTGAGAGAGAGAGAGAGAGAGATAGAGGGGGGGGAGGGGGGGAGG
GGGGGGGGGGGGGGGGGGTGGAGAGAGAGAGAGATAGGGGGGGGGGGGGG
GGGGGGGGGGGGAGAGAGGGAGGTAGGGGGGGGGGGGGGGGAGAGAGAGA
GATATATATATATATATACATATACATATATTATATTCCTTTTTTTGTGT
TTTGTTTTGTTGCCCTCTCCGGTCGCGATGTGGTATGTTGGGGGGGGTGG
GTTGGGGGGTGAGGTGATTGTTTCGTCCCGGTTGGTGGTTGGGTCGTTTG
TGTGCTCGGAGATTTTTTGCCGTCGATTTGTGTGTTATTGGTTTTTTTGT
GTTGGTGGAGTACGTTGTAACAGGGGGGTGTTGTCTGTAACCTTTTGCCG
AGCCGGCCTCTTGACGTGGTGTTTATTTTTGGACGTGTCGGGAGGATACA
TGTCGTGCATTATTGTGTTGTAGATTGTTGTTTGTGTTGTTTTATGCGTG
TGTGCTACAACTCGCGTTTGTTTCTTTTTTAAGTGCGCTGTATTGATCTT
TTGTTCTTTTTATTGGAGTCCCCGTGTGTTGCCTACTGAATATTTTCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_d09.b1 MSMg01no343_d09.b1 CHROMAT_FILE:
MSMg01no343_d09.b1 PHD_FILE: MSMg01no343_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:57 2005
         (411 letters)



>mm_chr16_66632668_66633478
          Length = 811

 Score =  741 bits (383), Expect = 0.0
 Identities = 401/407 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacactgaagcacactttatatcttataatgttttaagcacttcaagtgaaatta 64
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcacactgaagcaaactttatatcttataacgttttaagcacttcaagtgaaatta 264

                                                                       
Query: 65  cacaaaatgtctggcagacaaagttggtggcatttttcctcccaacaaaattaatcattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacaaaatgtctggcagacaaagttggtggcatttttcctcccaacaaaattaatcattg 324

                                                                       
Query: 125 cctccaggactaagtcagacttgtctgaattcaatttgaccacgcagattttacaactca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctccaggactaagtcagacttgtctgaattcaatttgaccacgcagattttacaactca 384

                                                                       
Query: 185 cttaaactattttgcttttggcaaagaatctctgtgtctgccactgctgtaaacctgcgc 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgaactattttgcttttggcaaagaatctctgtgtctgccactgctgtaaacctgcgc 444

                                                                       
Query: 245 ttggcatcgtttgaactatgaatatggacacaataacaagaggatctgcctaagaagcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggcatcgtttgaactatgaatatggacacaataacaagaggatctgcctaagaagcta 504

                                                                       
Query: 305 atggctttttcctcggtctttctctcaccagtaataggctagcagattttgtgtaatttt 364
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggctttttcatcggtctttctctcaccagtaataggctagcagattttgtgtaatttt 564

                                                          
Query: 365 tacctggggagagaaatgttagaaatatgttttttgaagttaaaaat 411
           |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 565 tacctggggatagtaatgttagaaatatgttttttgaagttaaaaat 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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