BAC Information

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BAC

Clone NameMSMg01-344A19
Chromosome16 (Build37)
Map Location 19,966,522 - 19,967,006
singlet/doubletsinglet
Overlap geneKlhl6
Upstream geneHira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
Downstream geneLOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344A19.T7 (MSMg01no344_a19.b1)MSMg01-344A19.TJ (MSMg01no344_a19.g1)
ACCAG457207AG457208
length759586
length of high quality
(start - end)		488 (45 - 532)---
definitionCHROMAT_FILE: MSMg01no344_a19.b1 PHD_FILE: MSMg01no344_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:07 2005CHROMAT_FILE: MSMg01no344_a19.g1 PHD_FILE: MSMg01no344_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTTATACCACATTCAATGGATGATATTCTACTCCAGTTTAGCC
CACACTTGGATTTCCCAGAAAATTAAGGGAATTGGGCATGCAAGAAGCAG
TACATGAGGAAACCAAACAAGACCAGATGCTTAGAGAAGGTTGCTTCAGC
CTAATCCTTCGAGGACTGGAGGACACACTTCACATCTGCCTCAACAAAAG
ATAAAGACATTGCTTTGGCACTGTAGTATCACATACAGCCTTCTGTTTGA
GACAGTCAAGGAGACTCTAAGAACAGGTAATTCTCAAGCAACCTGATTTT
TCAAAAGCCCAGAAGAAAGCCAAAAAATAAAAAAGTGCTGCCCAATGGTT
GTGGCAGGCAGAAGGCTGGAGCCCTCTCAAACCTTAGACTCATTCACATC
ATAGCATAATGAGAATGCAAATGAGAAAATGCAAATGGTTATTGATAAAT
TCCCACCTTCCTGAAGTATTTGAAGAATATGTAATACCACATACATCAGT
TAAAAACTCAAACAAGTATGACATTCCCGGCCAGATTGGCGGGATTTAAC
CTGGGAGAGACAGGNTGTTTGGGGGAAAAATAATTAATTTTCCGGTGGGG
GAACCCAGATAACAAGAAAAATGGATGGGAAAAAAAATTTCTCGGGTCCG
GCTTGAAAAACAAAGGCCCTGTGGAGGAAAAAACACCCCCCGGAAAGTTT
GGTGTCCAG

NTTTTTTCCCAAACAGGNNANCCTGGGGCCGCTGGCTCCACATTTAGGAC
CTATAAAGACCCGCATTCTANAAAGATCTCATAGGAAAGTCAATCCCAGT
ACCGGAATAGCAACAACCGAGGAACNNCACTAACCCCNNCAAGGTAAACA
AACCCGGAAAAAGTTGCAGGTCCAGGNAACCCTGGGGGGGGAACAAGGCG
GTACACGGGGGCGGGGGGGGGGGGGCAGCAGGGGGGGGAGGAGAGGGGGG
GGGCGCGGGCGGCTAANNGGCTGGNNNCAGNNGCTGNTGGGCGGGGGGGG
GCGGGGGCGAGGGGGCGGGCGGCTGGGGGGGGGGGGGCGGCGGGGGCCTN
NACTATAAAAAAANNNNAAAAACCCAANAGAGNAGAAGGAAAGAGACAGG
AACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_a19.b1 MSMg01no344_a19.b1 CHROMAT_FILE:
MSMg01no344_a19.b1 PHD_FILE: MSMg01no344_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:07 2005
         (488 letters)



>mm_chr16_19966318_19967206
          Length = 889

 Score =  891 bits (461), Expect = 0.0
 Identities = 479/487 (98%), Gaps = 5/487 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctt---ataccacattcaatggatgatattctactccagtttagcccacac 61
           ||||||||||||   ||  |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcttagaat--cacattcagtggatgatattctactccagtttagcccacac 262

                                                                       
Query: 62  ttggatttcccagaaaattaagggaattgggcatgcaagaagcagtacatgaggaaacca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttggatttcccagaaaattaagggaattgggcatgcaagaagcagtacatgaggaaacca 322

                                                                       
Query: 122 aacaagaccagatgcttagagaaggttgcttcagcctaatccttcgaggactggaggaca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacaagaccagatgcttagagaaggttgcttcagcctaatccttcgaggactggaggaca 382

                                                                       
Query: 182 cacttcacatctgcctcaacaaaagataaagacattgctttggcactgtagtatcacata 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacttcacatctgcctcaacaaaagataaagacattgctttggcactgtagtatcacata 442

                                                                       
Query: 242 cagccttctgtttgagacagtcaaggagactctaagaacaggtaattctcaagcaacctg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagccttctgtttgagacagtcaaggagactctaagaacaggtaattctcaagcaacctg 502

                                                                       
Query: 302 atttttcaaaagcccagaagaaagccaaaaaataaaaaagtgctgcccaatggttgtggc 361
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 503 atttttcaaaagcccagaagaaagccaaaaaattaaaaagtgctgcccaatggttgtggc 562

                                                                       
Query: 362 aggcagaaggctggagccctctcaaaccttagactcattcacatcatagcataatgagaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 563 aggcagaaggctggagccctctcaaaccttagactcattcacatcatggcataatgagaa 622

                                                                       
Query: 422 tgcaaatgagaaaatgcaaatggttattgataaattcccaccttcctgaagtatttgaag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgcaaatgagaaaatgcaaatggttattgataaattcccaccttcctgaagtatttgaag 682

                  
Query: 482 aatatgt 488
           |||||||
Sbjct: 683 aatatgt 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space:   420162
Effective search space used:   420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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