Query= MSMg01no344_i07.b1 MSMg01no344_i07.b1 CHROMAT_FILE:
MSMg01no344_i07.b1 PHD_FILE: MSMg01no344_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:43 2005
(521 letters)
>mm_chr16_79966655_79967575
Length = 921
Score = 808 bits (418), Expect = 0.0
Identities = 512/586 (87%), Gaps = 68/586 (11%)
Strand = Plus / Plus
Query: 4 ggaattctcttattttctggaacattgtcaaacactattaggatagaaacttgagaacaa 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ggaattctcttagtttctggaacattgtcaaacactattaggatagaaacttgagaacaa 195
Query: 64 tatataggaagttgatgaggaaagacagccttcagttcacatgggcactactaaacaaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tatataggaagttgatgaggaaagacagccttcagttcacatgggcactactaaacaaaa 255
Query: 124 tcacgtacaattttgaactgatagtacaacatgaatcttaacatttctagatgatatttt 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 256 taacgtacaattttgaactgatagtacaacatgaatcttaacatttctagatgttatttt 315
Query: 184 gatataagtggcttaagcctcctaagctagccttaggacctctcatgacctatttgaagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatataagtggcttaagcctcctaagctagccttaggacctctcatgacctatttgaagt 375
Query: 244 agccatggcataaacttctttggaccagaagacttgcttcctttatactttaattatgca 303
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 376 agccatggcataaacttctttggaccagaagacaggcttcctttatactttaattatgca 435
Query: 304 tcagttctgtactaacatggtacatgtgttcttccactcctctttttt-gtttgtttg-- 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 436 tcagttctgtactaacatggtacatgtgttcttccactcctctttttttgtttgtttggt 495
Query: 361 ----tttgttt-----gtttgtttgtttttttg--------------------------- 384
||||||| |||||||||||||||||
Sbjct: 496 tggttttgttttttttgtttgtttgtttttttgttgttgttgttgtttttttgttttttt 555
Query: 385 -----------------------------attctcaggattgtattttggtttgaggtca 415
|||||||||||||||||||||||||||||||
Sbjct: 556 gtttttttgttgttttttttttttttttgattctcaggattgtattttggtttgaggtca 615
Query: 416 aatttcttagcagtgatattttctggttttgttccgctaggcatgacacatctttcatat 475
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aatttcttagcagtgacattttctggttttgttccgctaggcatgacacatctttcatat 675
Query: 476 ttagtagaacacgtttgactggatttactcttacttcttactctaa 521
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttagtagaacacgtttgactggatttactcttacttcttactctaa 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_i07.g1 MSMg01no344_i07.g1 CHROMAT_FILE:
MSMg01no344_i07.g1 PHD_FILE: MSMg01no344_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:44 2005
(431 letters)
>mm_chr16_80149146_80149977
Length = 832
Score = 683 bits (353), Expect = 0.0
Identities = 417/447 (93%), Gaps = 16/447 (3%)
Strand = Plus / Minus
Query: 1 atctatttaatataagacatcatataatctatagtgaaattatctggatgtgatagaata 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atctatttaatataagacaacatataatctatagtgaaattatctggatgtgatagaatc 738
Query: 61 aacctgttgtctcagcatttggggcttagaagcaggcaaac----agttcaaggatatat 116
| |||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 737 agcctgttgtctcagcatttggggcttagaagcaggcagacagttagttcaaggatatat 678
Query: 117 taggctacatagaaagctatactcacaaaattcatcagga-----------aaa-tgagt 164
|||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 677 taggctacatagaaagttatactcacaaaattcatcaggaaggcttcaggcaaagtgagt 618
Query: 165 tcaattaactggcccagttcaaagtctgatcactctcaccagcaggccacatgctgcttg 224
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 617 gcaattaactggcccagttcaaagtctgattgctctcaccagcaggccacatgttgcttg 558
Query: 225 tgttcactgggaactgtgatagcaaacagctgttgcaagcactgtggacttcaaagtagt 284
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 557 tgttcactgggaactgtgatagcatacagctgttgcatgcactgtggacttcaaagtagt 498
Query: 285 tttcctaaggtagagaacttaacagagacagacgatctgtgaacttgaaagggttaaacg 344
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttcctaaggtagagaacttaagagagacagacgatctgtgaacttgaaagggttaaacg 438
Query: 345 caatgactagacacttatttaattaaaattatttgtaagcctttgaaatattaaagacat 404
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 437 caatgactagacacttatgtaattaaaattattcgtaagcctttgaaatattaaagacat 378
Query: 405 aattatttgaaattgtcacaaacactt 431
|||||||||||||||||||||||||||
Sbjct: 377 aattatttgaaattgtcacaaacactt 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 832
Length adjustment: 9
Effective length of query: 422
Effective length of database: 823
Effective search space: 347306
Effective search space used: 347306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
