Query= MSMg01no345_f03.b1 MSMg01no345_f03.b1 CHROMAT_FILE:
MSMg01no345_f03.b1 PHD_FILE: MSMg01no345_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:45 2005
(603 letters)
>mm_chr16_70026977_70027979
Length = 1003
Score = 1079 bits (558), Expect = 0.0
Identities = 585/600 (97%), Gaps = 12/600 (2%)
Strand = Plus / Plus
Query: 5 gaattccaggccgaagtgtgtgcatttgacattcagattcatttaattgcaattcatttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggccgaagtgtgtgcatttgacattcagattcatttaattgcaattcatttt 264
Query: 65 ggttatttgttttcctggcatttcaagagagatgagacctatgcatttaaatatatcatg 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 ggttatttgttttcctggcatttcaagagagatgagacccatgcatttaaatatatcatg 324
Query: 125 caacaacaacaacaaaaatccatttcttttccaggacttttatgatgtgttttatgcaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacaacaacaacaaaaatccatttcttttccaggacttttatgatgtgttttatgcaca 384
Query: 185 ctgaaagtaaaagaagaagactggatgtttgacacagatcagactggaaagctgagcctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaaagtaaaagaagaagactggatgtttgacacagatcagactggaaagctgagcctt 444
Query: 245 tgagggaaaattgcttaagatatacaaaacattcttatgcatgtagcaagtttagtagga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagggaaaattgcttaagatatacaaaacattcttatgcatgtagcaagtttagtagga 504
Query: 305 aaaataacaggaagagtagatgccctcatgtgcaagcattctgaccagtatgaaactagc 364
||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 aaaataacaggaagagtagatgccctcatgtgcaagcattctgacca-------ac---- 553
Query: 365 atggcaatgggcaacactggttcactgaaaactccaggtaatactatatcggaagtgtaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atggcaatgggcaacactggttcactgaaaactccaggtaatactatatcggaagtgtaa 613
Query: 425 atgacagttggaacacaaagacaagatcaccttgaggtacctggaccctagaagaggtgt 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atgacggttggaacacaaagacaagatcaccttgaggtacctggaccctagaagaggtgt 673
Query: 485 cagattttaggaagctgcacagggaatggcaaaacaaggtatgtattttgcttctgagcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cagattttaggaagctgcacagggaatggcaaaacaaggtatgtattttgcttctgagcc 733
Query: 545 attttctcagccctaattgctgcagctatttcacagtattgtgtc-atacattaatagtg 603
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 734 attttgtcagccctaattgctgcagctatttcacagtattgtgtccatacattaatagtg 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_f03.g1 MSMg01no345_f03.g1 CHROMAT_FILE:
MSMg01no345_f03.g1 PHD_FILE: MSMg01no345_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:45 2005
(484 letters)
>mm_chr16_70175070_70175953
Length = 884
Score = 897 bits (464), Expect = 0.0
Identities = 479/484 (98%)
Strand = Plus / Minus
Query: 1 acacgctatgtactgtgctgaccgcctctcctttgtaagttacggtgtccttatgtcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 acacgctatgtactgtgctgaccgcctctcctttgtaagttacggtgtccttatgtcacc 513
Query: 61 tgaagaaacagcacgtttaaagaaactctgcacgtgagaatcaaaaatagaaggcaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgaagaaacagcacgtttaaagaaactctgcacgtgagaatcaaaaatagaaggcaaaaa 453
Query: 121 gctggtgttctcttctgctcactcccacaacaccgtatgcctctctagtttctggaatga 180
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 452 gctggtgttctcttctgctcacacccacaacaccgtatgtctctctagtttctggaatga 393
Query: 181 atgtttaaagctggttccttatgaatgtttgtcttcagattataaacccctttaaggata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgtttaaagctggttccttatgaatgtttgtcttcagattataaacccctttaaggata 333
Query: 241 ctctttatctttgcaatattacttagtgtccaaccatgcctgagagacttagaaaacatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctctttatctttgcaatattacttagtgtccaaccatgcctgagagacttagaaaacatt 273
Query: 301 gggtctaaggaaaaatgggggatggtttgttaatgttacttaaaattcacatatcctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gggtctaaggaaaaatgggggatggtttgttaatgttacttaaaattcacatatcctctc 213
Query: 361 ttcttgggctggctctctctctctctctctgtctctctctcctcaaataaaattatcatc 420
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ctcttgggctggctctctctgtctctctctgtctctctctcctcaaataaaattatcatc 153
Query: 421 ttgcctgctagtgattttccctgggtctgttgacaatatttcacctattagtagcttttt 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 152 ttgcctgctagtgattttccctgggtctggtgacaatatttcacctattagtagcttttt 93
Query: 481 agca 484
||||
Sbjct: 92 agca 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
