BAC Information

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BAC

Clone NameMSMg01-345G11
Chromosome16 (Build37)
Map Location 64,237,426 - 64,237,858
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345G11.T7 (MSMg01no345_g11.b1)MSMg01-345G11.TJ (MSMg01no345_g11.g1)
ACCAG458235AG458236
length722757
length of high quality
(start - end)
522 (36 - 557)402 (58 - 459)
definitionCHROMAT_FILE: MSMg01no345_g11.b1 PHD_FILE: MSMg01no345_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:51 2005CHROMAT_FILE: MSMg01no345_g11.g1 PHD_FILE: MSMg01no345_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAGC
CTAGGCAGTGTGTGGCAAGAAGATTTTATTATTTATCCGTGTATTCAAGA
CCAGTCAGAAGCAAGCATGAGTGGCCTTATACTAGCAAAGACATAAATAG
TTAGACATACATTTTAAATTAGCTTTTGATAATCTGAATAGACCTTTATA
ACATTGAAATTGCATCATCATATAAGAATATTTTTAAAAAGGGTTGAATT
GCATATAGAGTATGTTGTGAAAATATAACTTTGAATTTCTATCTTATAAA
AATCTATACCAATTTAAAATATAAGACTGTTTCTTTCTTAGGCTAAAAGG
AGATACAACAATAAACAGAGAGCTCATTACATTTAAAAATGTTTTTTAAT
TGTTGCTGTAAACCATGTGGCCATCTTATGATGGTGAAATCACATGGTAG
GTTGCAAGCAATGTGGCCACTTATATCATGGGAGGTCACAAGCTAAGATG
AAGGTGATCCACACAGTCACTACTTAAAACATTTGTTGTCTTAGTCTGTC
TTTCTGTCTGTCTGTCTGTCTTTCTTTCTTTCTTTCTTCCCTTCTCTTTT
CTTAAATGCGAGTTGCATGCCAATCATATGCACATGTACATATATGGAGT
TGAAATACCCACCCCACCCCCCCTCTAAGCCGGAGTCCATATTATATATG
CCGGATACCTTTTTTAATAGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGAAAGGGCCTCCATTGTCTCAGAGGTGAAGGATTATGGGAG
GGGATTGTAGTCCTCCAGCGGCCATTGATGAACTAGGTACCTGAAAGGGT
TGCTGGAAATGAAAAAAGACTGGGTGCCAGAGAAGGATGAAGCCAAGACA
AAGGTTCTGATCAAGGCTCAAAGTTTAATATTCAGCACTGTATTTATATA
AGGAGAGCTCACAGACCCCATCCTTTGTTTCACCTGGATTATATTTGCAA
AGCAAGCTCAGCGGGCAGTCTGCTCCTGTAGGAAATTGCAGGTGCAGCAA
GGCAGAAAACTCCGCCTGGGTCATTAAAGTCCAACTATGGCAAGCACTTA
AGGTCTATTTAGCCTGCTCTAGACTGGAAGAAGCGCAAAAGGGATGATAG
GTGAGGGGTCAGTAGGTGTTATGTAAAGCCTTTTACACAACTAATTGACT
AAATTACTACTTAACGTAATATTCCCTTAGGCAATAACATATTCTTGCTC
CTTTTCACCGTGTATAGTGTTTTAATTTTTATTTCCCCATTTTTTGTTCA
TATGAGGAGTTCTCCCTTTATTCACCAATTCATCTATTCAGATCGTTGTC
ACACTTTACTCTTTTCCTCCTAACTCTTATTAAAATATTTTCTCTCTCAT
GTTATCTTTTCTTTCTTATTTCTCTTTCTCTTTAGGCGTTTCTTTCTACT
CTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_g11.b1 MSMg01no345_g11.b1 CHROMAT_FILE:
MSMg01no345_g11.b1 PHD_FILE: MSMg01no345_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:51 2005
         (522 letters)



>mm_chr16_64236937_64237858
          Length = 922

 Score =  830 bits (429), Expect = 0.0
 Identities = 432/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 90  ccttatactagcaaagacataaatagttagacatacattttaaattagcttttgataatc 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ccttatactagcaaagacataaatagttagacatacattttaaattagcttttgataatc 863

                                                                       
Query: 150 tgaatagacctttataacattgaaattgcatcatcatataagaatatttttaaaaagggt 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tgaatagacctttataacattgaaattgcatcatcatataagaatatttttaaaaagggt 803

                                                                       
Query: 210 tgaattgcatatagagtatgttgtgaaaatataactttgaatttctatcttataaaaatc 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgaattgcatatagagtatgttgtgaaaatataactttgaatttctatcttataaaaatc 743

                                                                       
Query: 270 tataccaatttaaaatataagactgtttctttcttaggctaaaaggagatacaacaataa 329
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 742 tataccaatttaaaatataagactgtttctttcttagtctaaaaggagatacaacaataa 683

                                                                       
Query: 330 acagagagctcattacatttaaaaatgttttttaattgttgctgtaaaccatgtggccat 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acagagagctcattacatttaaaaatgttttttaattgttgctgtaaaccatgtggccat 623

                                                                       
Query: 390 cttatgatggtgaaatcacatggtaggttgcaagcaatgtggccacttatatcatgggag 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cttatgatggtgaaatcacatggtaggttgcaagcaatgtggccacttatatcatgggag 563

                                                                       
Query: 450 gtcacaagctaagatgaaggtgatccacacagtcactacttaaaacatttgttgtcttag 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtcacaagctaagatgaaggtgatccacacagtcactacttaaaacatttgttgtcttag 503

                        
Query: 510 tctgtctttctgt 522
           |||||||||||||
Sbjct: 502 tctgtctttctgt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)