BAC Information

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BAC

Clone NameMSMg01-345G19
Chromosome16 (Build37)
Map Location 89,014,306 - 89,014,792
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik
Downstream geneLOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345G19.T7 (MSMg01no345_g19.b1)MSMg01-345G19.TJ (MSMg01no345_g19.g1)
ACCAG458251AG458252
length731708
length of high quality
(start - end)		568 (35 - 602)500 (57 - 556)
definitionCHROMAT_FILE: MSMg01no345_g19.b1 PHD_FILE: MSMg01no345_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:52 2005CHROMAT_FILE: MSMg01no345_g19.g1 PHD_FILE: MSMg01no345_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGACC
AGTGCCGCCCCATATGCCTCTAAAAATGGCAGGCTACAGCCAATGTTATT
TGTTTATCCTTGAGAATCTGACCACAAGACCTTGTGGATGAACACATAGT
TGAGTCACAGAACATGGAGAACTCAAGCTTTCCCTGACCTTGAATCTTCA
CACCACTGTGCAGCCTTTTCCCCTTTTTTATTAGATATTTTCTTCATTTA
CATTGCAAATGCTATCCCGAAAGTCCCCTATACACCCCCCCCCCCCGCCC
TGCATCCCAACCCACCTACTCCTGCTGCCTGGCCCTGGTATTCCCCTGTA
CTGAGGTATATAATCTTCACAAGACCAGGGCATCTCCTCCAATTGATGGC
CAATTAGGCCATCCTCTGCTATGTATGCAACTAGATACATAGTTCTGGGG
GTTACTGGATAGTTCATATTGTTGATCCTCCTATAGGGTTGCAAACCCCT
TTAGCTCCCTGGGTACTTTCTCTAGCTTCTTCATTAGGGGCCCTGTGTTC
CATCCAATATATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGG
CATAACCTCACAAGTGTTAGCTATATTAAGGTCCTGTCAGCAAAATCTTG
CTGGCATATGCAATACTGTCTGGGGTTGGTTGTTGAATATAGGATGGGAC
CCTGGCTGGCGGCAACTTCTGGATGGCCCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTAATATTGTGAACTTAGGAATTCCAAGAGAATGAGCAGCTTT
TATACTATTTCCAGTAATTTTTCATCACAAATGTTTATTGCGATCGATGA
TATTTACATACGTGGAGAAATTTGCTGACTCTTCAAAATACACCATAGGT
ACAAATCACTTCTTTTACAGGAAAGTTTTCAACAAACATATTAAGATCAA
GTAGATAAAATTTATTTATTAATAAATACTAAGTGAAAAACAATAGGTTG
GCTCAAGGTGGAAAGACACTTATTGCCAAATATAACAACTTGAATTAGTC
CCTAGTACTCAGATAGAAGAAAAGAACTGAGTTCTACAATTTGTCCTCTG
ACATACGCATGTGCCCTGTGTCTCACATGTACACAGGCATATAAACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ATACACAGTAAAGTTTGCTCAGTGTTTCAAAAGGCTTGTTGCTTTTATTG
AGGACCTAGGTCCAATTGGGAACACACACAAGGTGGCACACAACCTGATA
ACTCCTGTTCCAGGAAATCTGACATTCTATGTTGCTCTTTGAGGCACCCG
GCACACAAGTATTACACAGACTTGCTAATTTTCTCCCTACACGTATGTTC
AGAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_g19.g1 MSMg01no345_g19.g1 CHROMAT_FILE:
MSMg01no345_g19.g1 PHD_FILE: MSMg01no345_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:52 2005
         (500 letters)



>mm_chr16_89014106_89015004
          Length = 899

 Score =  824 bits (426), Expect = 0.0
 Identities = 476/500 (95%), Gaps = 13/500 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaatattgtgaacttaggaattccaagagaatgagcagcttttatactatttccagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaatattgtgaacttaggaattccaagagaatgagcagcttttatactatttccagta 260

                                                                       
Query: 61  atttttcatcacaaatgtttattgcgatcgatgatatttacatacgtggagaaatttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 atttttcatcacaaatgtttattgcgatcgatgatatttacatacgtggagaa-tttgct 319

                                                                       
Query: 121 gactcttcaaaatacaccataggtacaaatcacttcttttacaggaaagttttcaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gactcttcaaaatacaccataggtacaaatcacttcttttacaggaaagttttcaacaaa 379

                                                                       
Query: 181 catattaagatcaagtagataaaatttatttattaataaatactaagtgaaaaacaatag 240
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 catgttaagatcaagtagataaaatttatttattaataaatactaattgaaaaacaatag 439

                                                                       
Query: 241 gttggctcaaggtggaaagacacttattgccaaatataacaacttgaattagtccctagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttggctcaaggtggaaagacacttattgccaaatataacaacttgaattagtccctagt 499

                                                                       
Query: 301 actcagatagaagaaaagaactgagttctacaatttgtcctctgacatacgcatgtgccc 360
           |||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 500 actcagatagaagaaaagaactgagttctacaatttgtcctctggcacacacatgtgccc 559

                                                                       
Query: 361 tgtgtctcacatgtacacaggcatataaacacacacacacacacacacacacacacacac 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cgtgtctcacatgtacacaggcatataaacacacacacacacacacacacacacacacac 619

                                                                       
Query: 421 acacacacacacacacacacacacatacacagtaaagtttgctcagtgtttcaaaaggct 480
           ||||||||||||| | | |            ||| |||||||||||||||||||||| ||
Sbjct: 620 acacacacacacagagaga------------gtagagtttgctcagtgtttcaaaagcct 667

                               
Query: 481 tgttgcttttattgaggacc 500
           ||||||||||||||||||||
Sbjct: 668 tgttgcttttattgaggacc 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space:   435610
Effective search space used:   435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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