BAC Information

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BAC

Clone NameMSMg01-346D07
Chromosome16 (Build37)
Map Location 85,814,887 - 85,815,102
singlet/doubletsinglet
Overlap genenone
Upstream geneJam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000, Adamts1
Downstream geneAdamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346D07.T7 (MSMg01no346_d07.b1)MSMg01-346D07.TJ (MSMg01no346_d07.g1)
ACCAG458847AG458848
length856739
length of high quality
(start - end)		222 (38 - 259)487 (71 - 557)
definitionCHROMAT_FILE: MSMg01no346_d07.b1 PHD_FILE: MSMg01no346_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:50 2005CHROMAT_FILE: MSMg01no346_d07.g1 PHD_FILE: MSMg01no346_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCC
AAGCCTTCCTGAGTTATAGGCAAGGTTCTGTCTCTTGTCACTGTAAAGAA
GACACAGGGAATGCATAATATTTTAGTCCCACCAAAAATTGATATTTTTT
CCCAGGATAATGTTTATACTCAAATCACTTCTGGCCTACTTATTTCTCTG
GAAGCAACTATCATGTGTTCATTGCATTCTTTATTTGATTTGGGGTTGTT
GTTGTTGGTGGTTCTCCTTCTTTCCCCTTCCCCTTTTTCTATTTTTCTTT
TTTTCACTTTTCTTTTTTTCTTTTTTCCTTTTTTTCCTTTTTAGATTTTT
TTTTCCCTTCCCTTTTTACCCTTTCCCTCATCTTCTATCCTTTCTTTCCC
GCACCCCTATTTTTACCCCTCCCTCTCTACTTCACTACCTTTTTCCTTCG
TAATATTACCAACTTCCCTTTCCAAGTTTTTTTTTTTCTCTCCCCCTCCC
CCATTATCCCCAATGTTTTTTATTTTCAAACACTTTTTCTCTTTTTTAAC
ATTATATATATTAATTAAATCCCAATCCCACTCCACTCCTACACTTTTTT
TTTTCATTCCATTTCCCCGCTTTCTTTCTTTATACCTCCTACCCTATACT
TATTTTCTCCTCTCATTTTTCCTTTCACTTTCCTCCACCTCAACTTATTT
CCCCCCCCTGACATTTCACCTTCAATATAATATGATTCTCCCCACATCTT
TTTTTTTCTATTCTCCCCTCCTGCTCTTATTTGCCCCCCGCCCCTCCTTT
CTTTACGCTCCCCAACATTTTTTTTATCTCTATATACTCCTATTAACACT
TCTCCN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCTCGCCCACCCACCCACTCCTACCTCA
CTGCCCTAGTATTCCCCTACACTGGGGCATCCAGCCTTCACAGGACCAAG
GGCCTCATCTCTCACTGATGCCAGAAAAGGTCATCCTCTGCTATATATGC
AGCTGGAGCCCTGGGTCCCTCCATGTGTACCTCTTGACTGGTGGATTAGT
CTCTGGGAGCTCGGGGCGGGGGGTCTGGTTGGTTGATATTGTTCTTCCTG
GGATTGCAAACCCCTTCAGTTCCTCATGAAGGGTTTTCTTGACTAGATTA
TTTGAAGTGGGAAGACCTACCTTAAATATGGGCAGCACAGTCCAGTGACA
TCATAGCTAAAGGGAGTTGGAAGAAGGAAGCTTGAATTTTGCCTACTTGC
CTTCACTCTCATTTGGCAAGTTCATCTACCTGATCGCTACAGCTACTGAT
GCTGATTTCAGGTTCTTTGGGGTTCTAACATAGATTGATAATAAGCAGTT
CTCCAGGAATCCTTCAGGGCATTTGCGTCAGATTGGGATTGAATGCCATC
CATATTTAAAGACTGAGAGAATTCTGTAAATTTTGGCTTCCCTATTGGGA
GCTACCCTTGTTGGATAATTCTCACCCCCTTTATTAAAAATCAACCAAAC
CATTTTTAAAGGGATTCCCTAATCAGCCTGAACTCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_d07.b1 MSMg01no346_d07.b1 CHROMAT_FILE:
MSMg01no346_d07.b1 PHD_FILE: MSMg01no346_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:50 2005
         (222 letters)



>mm_chr16_85814681_85815304
          Length = 624

 Score =  379 bits (196), Expect = e-110
 Identities = 211/216 (97%), Gaps = 2/216 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccaagccttcctgagttataggcaaggttctgtctcttgtcactgtaaagaagac 66
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaattccaagccaccctgagttataggcaaggttctgtctcttgtcactgtaaagaagac 363

                                                                       
Query: 67  acagggaatgcataatattttagtcccaccaaaaattga-ta-ttttttcccaggataat 124
           |||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct: 362 acagggaatgcataatatttcagtcccaccaaaaattgattatttttttcccaggataat 303

                                                                       
Query: 125 gtttatactcaaatcacttctggcctacttatttctctggaagcaactatcatgtgttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtttatactcaaatcacttctggcctacttatttctctggaagcaactatcatgtgttca 243

                                               
Query: 185 ttgcattctttatttgatttggggttgttgttgttg 220
           ||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttgcattctttatttgatttggggttgttgttgttg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 624
Length adjustment: 9
Effective length of query: 213
Effective length of database: 615
Effective search space:   130995
Effective search space used:   130995
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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