BAC Information

Click to search

BAC

Clone NameMSMg01-347D16
Chromosome16 (Build37)
Map Location 59,420,968 - 59,421,278
singlet/doubletsinglet
Overlap geneGabrr3
Upstream geneDcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207
Downstream geneLOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6, LOC100043804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347D16.T7 (MSMg01no347_d16.b1)MSMg01-347D16.TJ (MSMg01no347_d16.g1)
ACCAG459622AG459623
length807753
length of high quality
(start - end)		254 (71 - 324)333 (80 - 412)
definitionCHROMAT_FILE: MSMg01no347_d16.b1 PHD_FILE: MSMg01no347_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:08 2005CHROMAT_FILE: MSMg01no347_d16.g1 PHD_FILE: MSMg01no347_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGAGGATCCGCG
GAATTCCAAGTTCTACACGGCTAGCCTGGCAACTTAGTGGTGCACTGTGT
CAAAAGAAAATAAACAAAAGGGGCCTTGTATGGATCAGTGGTGATGGGAG
TTCAGGTTCAGTACACACACACACACACACACACCCACACACACACACAC
ACATACATACATACACACATACATATGCACACATACACACACACACTCAA
CTTTGAGGTGTGAATTTTGTTTCTTAAAACTCGAGGATTAGTTTTTGAAC
TATAGCATATGCTTTAGTGATCGTTTCACAAGAAAGCAAGGTTGCTCAGT
CGGAACATAAAGGCTCTCATGTACAAACGAGTGATTTCCCAGTCCTTGAC
TAATACTTTCTCTGCCCTTCAATTGCTCATGCACTGATTTTCTCCCGTTA
CTTTGCACTTGCTATTTCTCTTCTAACCTCATCTATTTTCCGCATATTTT
TTCCCTTTTCCCTCCTCTCCCTCCTTTCTTTTTATCATTTCGCTTCTTTC
CTTTCTTCCCCTTTCCCCTTTTCTTTCCTCTTCCCCTTTTCCTCCCTTCT
TTTATTCCTTCTTCACACTTCCTCCCCACCCCTTTACTTCCCTTTCCTTT
TCCCCCTTCCCTTTTCCCTCCCTTTTCACCTTTCTTCTTCTTCCCTTTTC
TTTCCCCCTCCCCCCTTCTTCACCCTTCCTACCCCTTCCTCCTTTCCCTC
CTCCCTTTCTCCCCCTTTCCCTCTTCCTTTCTCCCTTTCTTTTTTCCCCC
TTCTTTT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGATTTTGTTTGCTTGTTTG
CTTGTTTGTTTAGAGGCTATCGTGAAAGGTACTGTTTCACTGATTTCCTT
CTGTTTTTCTGATTGCCATCTGTACACAGGAGAGTATTCTGTATCCTGTT
GATAAATTTGCTAAAAGTGTGTTAGCTGTAGACATTTTCATGTGAAGTCT
TTAGGGAAAGGTATGCTGTTAAAGTTTCCCTTTCCTATGCATAGCCCCTC
GGCCTCCTTCAACTCTAGTTAAGACTTCCTTAATTCCTGGGAGCTAGGTT
CCTCAAATAAAGTGTTCTCTGTTGTAGAAGAAGAGAGATTTTGGTTTTGG
TTTGGGTTTTGGNNNGNNNNNNNTTTNTTTNNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTT
TTTNNTTTTTTTTTTTTTTTTTGTTTTTTTTTTNTTNNTTTTTTTTTTTT
TTTTTTTTTTTTTTGTGTTTTTTTTTTGTTTGTGTTTTTGTTTTTTTTTG
TTTTTGGTGGGGTTGTTCNGTNGGTTTATTTTTTTTTTTTTTTTGTTGTT
TTTTTTTTGTGTTTGTTTTTTTTTCTTTTCCCCCTCCTCCCCTCTTTTTT
CCCCCTTCTGCCCTTTTTTTCCTTTTCCCTTTCCCTCTCCTTTTTTCTCC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_d16.g1 MSMg01no347_d16.g1 CHROMAT_FILE:
MSMg01no347_d16.g1 PHD_FILE: MSMg01no347_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:08 2005
         (333 letters)



>mm_chr16_59420751_59421487
          Length = 737

 Score =  462 bits (239), Expect = e-134
 Identities = 293/319 (91%), Gaps = 17/319 (5%)
 Strand = Plus / Plus

                                                                       
Query: 15  ttgtttgcttgtttgtttagaggctatcgtgaaaggtactgtttcactgatttccttctg 74
           |||||||||||||||||       |||||||||||||||||||| |||||||||||||||
Sbjct: 218 ttgtttgcttgtttgtt-------tatcgtgaaaggtactgttttactgatttccttctg 270

                                                                       
Query: 75  tttttctgattgccatctgtacacaggagagtattctgtatcctgttgataaatttgcta 134
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 271 tttttctgattgtcatctgtacacaggagagtattctgtatcctgttgataaatttacta 330

                                                                       
Query: 135 aaagtgtgttagctgtagacattttcatgtga-agtctttagg----gaaaggtatgctg 189
           |||| ||||||||||||||||||||||||||| | ||||||||    |||||||||||||
Sbjct: 331 aaagcgtgttagctgtagacattttcatgtgaca-tctttaggtttcgaaaggtatgctg 389

                                                                       
Query: 190 ttaaagtttccctttcctatgcatagcccctcggcctccttcaactctagttaagacttc 249
           ||||||||||||||||||||||||||||||||  ||| |||||||||||||||| |||||
Sbjct: 390 ttaaagtttccctttcctatgcatagcccctccaccttcttcaactctagttaaaacttc 449

                                                                       
Query: 250 ----cttaattcctgggagctaggttcctcaaataaagtgttctctgttgtagaagaaga 305
               ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 450 aaaccttaattcctgggagctaggttcctcaaataaattgttctctgttgtagaagaaga 509

                              
Query: 306 gagattttggttttggttt 324
           |||||||||||||||||||
Sbjct: 510 gagattttggttttggttt 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 737
Length adjustment: 9
Effective length of query: 324
Effective length of database: 728
Effective search space:   235872
Effective search space used:   235872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |