BAC Information

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BAC

Clone NameMSMg01-347K08
Chromosome16 (Build37)
Map Location 56,298,160 - 56,298,588
singlet/doubletsinglet
Overlap genenone
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2
Downstream geneLOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347K08.T7 (MSMg01no347_k08.b1)MSMg01-347K08.TJ (MSMg01no347_k08.g1)
ACCAG459937AG459938
length768796
length of high quality
(start - end)		433 (50 - 482)462 (72 - 533)
definitionCHROMAT_FILE: MSMg01no347_k08.b1 PHD_FILE: MSMg01no347_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:41 2005CHROMAT_FILE: MSMg01no347_k08.g1 PHD_FILE: MSMg01no347_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTATGTAAAATAAGGGAATTTAAAAGATTGATAGTTCAGT
TGGTGTGACTGGTGCTCACACAGAGGGTTGCTGTGCTCGCTTCTTCATCA
TTGAATGTGTTTAAAATTATCCATGAAGAAAAGCAAATACAAAACTAATA
AAATAAAAATATAAAGGCATATAAACATATAAAATGTCATCCTATCTCCC
CAAAGAGGTTGAACAAACGGCTAAAGTCTCATGTATTTCAAAATCCTTCG
GCATCCTCTGTAATTCGGTAAGATTACGCCAGTATAGTTTCAAACTATTT
TAAGGAGTGTTAGCAATATAAATTGTCTTCCCCTGGGAGGATTTTTCAAA
CCAGTAGCACATTCTTGAATGTATGTACTTTGCCAAGTTATGGGAACTAT
GTCATGGAATACAATGAGGGACCCCATGTGTCCTAGTGATTTAGAGTCTT
TATGTGTAGAAGTCAATGTCAGGTCTCCAGAAATAACAATGCAGTTCTTC
CTGTGTTTCCCCTTAAGGGAACAGAAAATTGTTCCTTCCTCGAAAAATTA
AAACCTTCCCACACTGTTCCTATTGGAGCTCCCAAACTAAAAAACTTAAA
AGTGAAAAAAACTTCCCCCCCCATTGCCTTAATTTTCCCAATAACACGTT
CTATTACAAAAGGGTGTTTTCTACTTATTTTCTGCTTTTCCTCCTTATTC
CATTTTTTTTTTCTCCCC

TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTAATCCACTTAGATTTGGCCTTAGTAC
AAGGAGATAGAAATGGATCAATTCACATTCTTCTACATGATAACTGCCAG
TTGTGCCAGCACCATTTGTTGAAAATGTTGTCTTTCCTCCACTGGATGGT
TTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTAGGTTCATTT
CTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTATACCAG
TACCATGCAGTTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAG
GCATGGTGATTCCACCCGAGGTTCTTTTATCCTTGAGAAGAGGTTTTGCT
ATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAGATTGCCCTTTCTAA
TTCGTTGAAGAATTGAGTTGGAATTTTGATTGTGATTACGTTGAATCTGT
ATATTGCTTTTGGCAATATAGCCATTTTTACAATGTTGATCCTGCCAATC
CATGAGCATGAGAGATCTTTTCTTCGTCTGAGACCCTCTTTAATTTCCTC
CTTTAGAGACTTGAAACTCCTTATCACAATAATCTTTTATCTTCCTTTCC
TAAAGTCTTCTCCACTCTCTTCATTTTTTTTTGCACTCCCCCTTATCCCT
CTCTCCCCCCTTTATTTCTTCTTATCCCCTTCTTCACCTTTTTTTTTAAA
ATATCCCTCATATTTATTTTTCTTCCCATCCCTCTTTTTTTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_k08.b1 MSMg01no347_k08.b1 CHROMAT_FILE:
MSMg01no347_k08.b1 PHD_FILE: MSMg01no347_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:41 2005
         (433 letters)



>mm_chr16_56297956_56298788
          Length = 833

 Score =  783 bits (405), Expect = 0.0
 Identities = 423/429 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttatgtaaaataagggaatttaaaagattgatagttcagttggtgtgactggt 64
           |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttatggaaaataagggaatttgaaagattgatagttcagttggtgtgactggt 264

                                                                       
Query: 65  gctcacacagagggttgctgtgctcgcttcttcatcattgaatgtgtttaaaattatcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctcacacagagggttgctgtgctcgcttcttcatcattgaatgtgtttaaaattatcca 324

                                                                       
Query: 125 tgaagaaaagcaaatacaaaactaataaaataaaaatataaaggcatataaacatataaa 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaagaaaagcaaatacaaaaataataaaataaaaatataaaggcatataaacatataaa 384

                                                                       
Query: 185 atgtcatcctatctccccaaagaggttgaacaaacggctaaagtctcatgtatttcaaaa 244
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 atgtcatcctctctccccaaagaggttgaacaaacggctaaagtctcgtgtatttcaaaa 444

                                                                       
Query: 245 tccttcggcatcctctgtaattcggtaagattacgccagtatagtttcaaactattttaa 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccttcggcatcctctgtaattcggtaagattacgccagtatagtttcaaactattttaa 504

                                                                       
Query: 305 ggagtgttagcaatataaattgtcttcccctgggaggatttttcaaaccagtagcacatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggagtgttagcaatataaattgtcttcccctgggaggatttttcaaaccagtagcacatt 564

                                                                       
Query: 365 cttgaatgtatgtactttgccaagttatgggaactatgtcatggaatacaatgagggacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttgaatgtatgtactttgccaagttatgggaactatgtcatggaatacaatgagggacc 624

                    
Query: 425 ccatgtgtc 433
           |||||||||
Sbjct: 625 ccatgtgtc 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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