Query= MSMg01no348_n09.b1 MSMg01no348_n09.b1 CHROMAT_FILE:
MSMg01no348_n09.b1 PHD_FILE: MSMg01no348_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:16 2005
(562 letters)
>mm_chr16_37397104_37398065
Length = 962
Score = 1054 bits (545), Expect = 0.0
Identities = 556/561 (99%), Gaps = 3/561 (0%)
Strand = Plus / Plus
Query: 5 gaattcacatgttcgttctgattttttccagatagaaataagcagaagccaagtattctt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcacatgtttgttctgattttttccagatagaaataagcagaagccaagtattctt 261
Query: 65 ttcactttggcctttagatattttttttaatatgat---aaaaaaaaagcaagcttgcct 121
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 ttcactttggcctttagatattttttttaatatgataaaaaaaaaaaagcaagcttgcct 321
Query: 122 cctgggtgtaaggagagcttctagctataagagccaatcaatcagaaagggcatttgtgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctgggtgtaaggagagcttctagctataagagccaatcaatcagaaagggcatttgtgg 381
Query: 182 gtaggagttgtgaaaaattgccagcttgaccttgacaaaagaaaaataatggagactggt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtaggagttgtgaaaaattgccagcttgaccttgacaaaagaaaaataatggagactggt 441
Query: 242 agcaactggtactcatttcccaggtgttgctgtctctttcacatttttaatttgatttaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agcaactggtactcatttcccaggtgttgctgtctctttcacatttttaatttgatttaa 501
Query: 302 atttctctcccctaccacctactcacccattttcctgtatactattatcatcaaaatgta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atttctctcccctaccacctactcacccattttcctgtatactattatcatcaaaatgta 561
Query: 362 tgttagggagccctcacagctggctcagaagctccttctggtaggttaatatcatcttga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgttagggagccctcacagctggctcagaagctccttctggtaggttaatatcatcttga 621
Query: 422 ctcaatgatgctgtgcataatgtaatctaatgaagctgtgcctgaaaagcattaaacata 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctcaatgatgctgtgcataatgtaatctaatgaagctgtgcctgaaaagcattaaacata 681
Query: 482 aaaaaatcacccatccaaagcaacagaaagcagaaatgcaatgagattaccagaatcacc 541
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 682 aaaaaatcacccatccaaagcaacagaaagcagaaatgcaatgtgattaccagaatcacc 741
Query: 542 ttgactcatataagttaatgg 562
|||||||||||||||||||||
Sbjct: 742 ttgactcatataagttaatgg 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_n09.g1 MSMg01no348_n09.g1 CHROMAT_FILE:
MSMg01no348_n09.g1 PHD_FILE: MSMg01no348_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:16 2005
(467 letters)
>mm_chr16_37562849_37563715
Length = 867
Score = 837 bits (433), Expect = 0.0
Identities = 457/465 (98%), Gaps = 2/465 (0%)
Strand = Plus / Minus
Query: 1 caactcttcatcttattattcaaagtctgtttctgggtctctttatagcagataactagg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 664 caactcttcatcttattattcaaagtctgtttctgtgtctctttatagcagataactagg 605
Query: 61 atggctgagggcctaccaagtacaccatgatcatgtgactcaagtgtccataatgcagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atggctgagggcctaccaagtacaccatgatcatgtgactcaagtgtccataatgcagtg 545
Query: 121 tcttcagtaggtaacagcttcaaaaattttcagtgtgaaagaaggaagtagatttaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcttcagtaggtaacagcttcaaaaattttcagtgtgaaagaaggaagtagatttaaagc 485
Query: 181 tcagtgtgtggaaaacccaggagcctagcaca-gaatgcaggcacttcatgcacaaatcc 239
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 484 tcagtgtgtggaaaacccaggagcctagca-aggaatgcaggcacttcatgcacaaatcc 426
Query: 240 tccagcttgcatatgtattcctggctatgagtaattaaaaaaaccttttcagagtgaaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tccagcttgcatatgtattcctggctatgagtaattaaaaaaaccttttcagagtgaaaa 366
Query: 300 gagctggggaagcggtgcctgagtgagacacagcttggatggaagcggaggaaaactgct 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gagctggggaagcggcgcctgagtgagacacagcttggatggaagcggaggaaaactgct 306
Query: 360 gaaatgttaaaagcatgattctaaaaggcaagacgactagtaccaaagaattatccttac 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 305 gaaatgttaaaagcatgattctaaaaggcaagacgaccagtaccaaagaattatccttac 246
Query: 420 atgacagtcgtaaaagacagaggatcggccatcataatctcttag 464
||||||||| ||| |||||||||||||||||||| ||||||||||
Sbjct: 245 atgacagtcataagagacagaggatcggccatcagaatctcttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
