BAC Information

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BAC

Clone NameMSMg01-349H20
Chromosome16 (Build37)
Map Location 68,356,093 - 68,356,266
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm2, 9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349H20.T7 (MSMg01no349_h20.b1)MSMg01-349H20.TJ (MSMg01no349_h20.g1)
ACCAG461332AG461333
length788773
length of high quality
(start - end)
58 (117 - 174)564 (70 - 633)
definitionCHROMAT_FILE: MSMg01no349_h20.b1 PHD_FILE: MSMg01no349_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:07 2005CHROMAT_FILE: MSMg01no349_h20.g1 PHD_FILE: MSMg01no349_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGCTATACGACTCCTATTTTCTCGAGTATCCGCGGAATTCAAATCTTTT
TACTCTCTTGCTGCTGGGCCTTGAGAATATGATGACTGTAAGGCCAATTA
TGGATATGACAGCCAAGTAATTCTTCTGAGTTTCATCAAATGAACTCCAT
TCCTGTCATTGTCTATTTGAAATGATAGGGTGAACAAAATAGCAGATTAC
GTAAAGAAATATAATGGGCATTTGCCTTTCTCAAATGTTATTCTGAAGAC
TATATTATTTTATTGAGAATTCCTCTTATTCCTAGCTAGCCTCATTAGAT
GTATGTTGCTATAGATGCATTTTTTGTTCTACATACCAAAATACACAATT
ACTACACTATATAGCTTGTGAGTTATACCTATATGGGTGAACATATCACA
TTAACTATATTTTATACCATCACCAACGGATTACTAACCCCATAAATATT
ATCTAATAAGCCGGTCAATTGACTCCACTATTATGATTAGATATATTGAT
ATCCATATTTCCAACTTTTTGCCCCCCCTGATCCTTTGATACAATATACA
CAGTGTGTTCTATGACTGCCACTTTCCGTATACATTACAAAGATCCTTTC
TGTATCCATCCTTCCACTTTCCTGTATGCCTATTACCCCCCCCCTTCCCC
TTCCCCCCTTCTTTTCCCCACATTTTCTCTTCCCTTCTCCCCACATTATT
ATTGGCCCCTATGCCTCCTCCATCGGTTTTGCCCCTCCCACCTACACCTC
TATTATTTCTCTCCTCCCTCTTTTTTTTCACCCCCTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACATACTAGTAGGACATAGATTCCAGATTC
CAAATAATTTTCTATTGGAAAATTATTGTGTTTGACCTATAAAAAATATA
GTTTGTGTTATTGTATTTTAAGTGACTGTATTTTCTTTCTCTTCTCTGTG
TCAGTCTCTGTCTCTCTCTCTATATATATGTATGTAATATGTAATACGTA
ATACGTAATACGTAATATGTAATACGTAATACGTAATACATAATACGTAA
TACGTAATATAATACATAATACATGATACATGATACATGATACATGATAC
ATGATACATGATACATGATACATGATACATGATACATGATACATGATACA
TGATACATGATACATGATACATGATACATGATACATGATACATGATACAT
AATACATAATACATAATACATAATAATAAAATATATAACATAATATATAA
TATATAATATATAATATATATAATATAATATACAATACATGACATACAAT
ATATGATATACAATATATAATATATAGTATATAGCATATAATATATAATG
TATGTATATTGTATATAATATATGTTTATTGTATATAATATATAATATAT
GCATACTACATAACATATTATATATTCTTATATGCTCATCGTATACAATA
TATGTATTTCTATTATAATATGTTAACACTTTTTAAAATGCCTCATCTCT
ATTTCAACTACATATCCATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_h20.g1 MSMg01no349_h20.g1 CHROMAT_FILE:
MSMg01no349_h20.g1 PHD_FILE: MSMg01no349_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:07 2005
         (564 letters)



>mm_chr16_68355893_68356857
          Length = 965

 Score =  252 bits (130), Expect = 7e-71
 Identities = 161/174 (92%), Gaps = 7/174 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatactagtaggacatagattccagattccaaataattttctattggaaaattattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatactagtaggacatagattccagattccaaataattttctattggaaaattattgt 260

                                                                       
Query: 61  gtttgacctataaaaaatatag-tttgtgttattgtattttaagtgactgtattttcttt 119
           ||||| |||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||
Sbjct: 261 gtttggcctataaaaaatataggtttttgttattgtattttaagtgattgtgttttcttt 320

                                                                 
Query: 120 ctcttctctgtgtca--gtctctgtctctctctct----atatatatgtatgta 167
           ||||||||||||||   ||||||||||||||||||    |||||||| ||||||
Sbjct: 321 ctcttctctgtgtcgctgtctctgtctctctctctctctatatatatatatgta 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space:   529070
Effective search space used:   529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)