BAC Information

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BAC

Clone NameMSMg01-349K13
Chromosome16 (Build37)
Map Location 18,960,122 - 18,960,541
singlet/doubletsinglet
Overlap geneHira
Upstream geneVpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40
Downstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349K13.T7 (MSMg01no349_k13.b1)MSMg01-349K13.TJ (MSMg01no349_k13.g1)
ACCAG461461AG461462
length735755
length of high quality
(start - end)		595 (41 - 635)548 (73 - 620)
definitionCHROMAT_FILE: MSMg01no349_k13.b1 PHD_FILE: MSMg01no349_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:20 2005CHROMAT_FILE: MSMg01no349_k13.g1 PHD_FILE: MSMg01no349_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAA
TTCTACTATAGTCACGATCCTTTCTCAAAAAAAAAACAAAAAAACCAAAA
CAAAACCCTAAACGCAAGGGTCGTTTTACTATTTTCATGAACTTACTGTG
TGAATGCATGTGTCTATGTGTACATATGTCCAAAGAGGCCAGAAAAGGGT
ATAGGATACTCTGGAGATGGAGTTACAAGCAATTATGGGCCAGTAGACAT
GGAGCTGGGGGTGGGAGGGTGTCTGTCCTCTGGAAGGGCAGTATGCACTT
TTCTTTTTAAATTAATTAATTTATTCTTATTTTATGTGCATTGGGGCTTT
GCCTGTGTGTACATTTGTGTGAGAGTCAGAACCCCTGGAACTGGAGTCAC
AGACAGTTGTGAGCTGCCATGTGGATTGAACCTGGATCCTCTAGAAGAGC
AGTCAGTGCTCTTAACTGCTGAGCCATATTTCCAGCCCAAGAAAGTGCAT
TTTTTTTTCTGGTTTTTCGGGACAGGGTTTCCCCTGTGTCCTAGAACTCA
CTCTGTAGCCCAGGCTGGCCTTGAACTCACAAAGATTCATGTGCCTTTGC
TTCACAGGCTGGGATTAAAGGCATGTGCCATTACTGCCCAGCAAGAAAGC
ACAATTGTAATCCAAGAAAACCCTACATTTCTTTCAGTTAGGCTTGACTC
ATCCCCTTACTCTGCACATCTTTGTGTGCTGCTCN

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATGCGCAGTTGAGTGTCACTGCCTCT
CGATACCAAGGCCTGCTTTATTTTCCCTGGAACTGCCAACCAGGATGTAG
TTTCTGTGTCTTTGCCTTTAAAAGCTCCTGTAAAACACATTAAGGCTGCC
CTGTGAGAAGTCTTTCTCTCCAGACAATCACCAGCTGCCGTGTAGAATAA
TATAGACAAGTGCATGACAGAGCCGACCCTGGTTGCAGGGGTTGCTGGTG
AGCTGGCCTGAAGGTGTGAGATTATGAAAGACCACTGGCTGGCCAGCTGG
TCCAATTCCAGAGTTTTGAATTGGCCCACTCCAACATCTACCCCATCAAT
AGACTGCTGGAGTACATGAAGGGGCCGATCCTACAGATCCAAAATTAGAG
GGATGTCTGAGAGGAGTCCCAATGAGGTTCCAGTATTCATAAGAGTAGCC
AGAGGCCTCATATCTGACCAACAAGTCATTGCAATGAACAACTGCAAGTA
AAGAAGTGTGGACAAAAGGGTAGACTGTGGGACACAATGTGGTATATCCA
CAACGAAATTTTTTCTCTGTTGTGGGGAAGGCTGCAAGGGTGGAGGGTGG
GTACCAAGGGCAGGGAGATATGAGTGGGATTGGGATGCATGACGTGAAAC
TCACAAACAACCCCTATAAAGCTACCAATATATATAATAATTTCCCCTGA
AATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_k13.g1 MSMg01no349_k13.g1 CHROMAT_FILE:
MSMg01no349_k13.g1 PHD_FILE: MSMg01no349_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:20 2005
         (548 letters)



>mm_chr16_18960122_18961069
          Length = 948

 Score =  750 bits (388), Expect = 0.0
 Identities = 412/420 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgcgcagttgagtgtcactgcctctcgataccaaggcctgctttattttccctggaa 60
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 420 ctattcgcagttgagtgtcactgcctctcgataccaaggcttgctttattttccctggaa 361

                                                                       
Query: 61  ctgccaaccaggatgtagtttctgtgtctttgcctttaaaagctcctgtaaaacacatta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 360 ctgccaaccaggatgtagtttctgtgtctttgcctttaaaagctcctgtaaaacgcatta 301

                                                                       
Query: 121 aggctgccctgtgagaagtctttctctccagacaatcaccagctgccgtgtagaataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aggctgccctgtgagaagtctttctctccagacaatcaccagctgccgtgtagaataata 241

                                                                       
Query: 181 tagacaagtgcatgacagagccgaccctggttgcaggggttgctggtgagctggcctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 240 tagacaagtgcatgacagagccgaccctggttgcaggggttgctggtgagctggcctgag 181

                                                                       
Query: 241 ggtgtgagattatgaaagaccactggctggccagctggtccaattccagagttttgaatt 300
           |||||||||  | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ggtgtgagagcaggaaaggccactggctggccagctggtccaattccagagttttgaatt 121

                                                                       
Query: 301 ggcccactccaacatctaccccatcaatagactgctggagtacatgaaggggccgatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggcccactccaacatctaccccatcaatagactgctggagtacatgaaggggccgatcct 61

                                                                       
Query: 361 acagatccaaaattagagggatgtctgagaggagtcccaatgaggttccagtattcataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  acagatccaaaattagagggatgtctgagaggagtcccaatgaggttccagtattcataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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