Query= MSMg01no349_l06.b1 MSMg01no349_l06.b1 CHROMAT_FILE:
MSMg01no349_l06.b1 PHD_FILE: MSMg01no349_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:24 2005
(456 letters)
>mm_chr16_94643605_94644460
Length = 856
Score = 775 bits (401), Expect = 0.0
Identities = 443/457 (96%), Gaps = 4/457 (0%)
Strand = Plus / Minus
Query: 2 cacctaggtacagccaatatacactgcttcactgtgtctaactctgttgctcccttgcgt 61
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 656 cacctaggtacagccaatgtacactgcttcactgtgtctaactctgttgcttccttgcgt 597
Query: 62 ttaaccttgtgctcatcacccgaacccccaccctttatcttcctcaggtgtgaacagata 121
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 596 ttaaccttgtgctcatcacccgaacccccaccctttatcttcctcatgtgtaaacagata 537
Query: 122 tgatcatgatctactacttacaggactgccttaaggaaacctgacataagcaaaaggcag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgatcatgatctactacttacaggactgccttaaggaaacctgacataagcaaaaggcag 477
Query: 182 aagactagcacccaggagcacccagagaggca-agcacagagcgctgctacctctgtcct 240
|||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 476 aagactagcacccaggagcacccagagaggcata-cacagagtgctgctacctctgtcct 418
Query: 241 ctagccccaagtcttcatgtta-aggggctctcaagccagaatggaatacttaaacaaat 299
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctagccccaagtcttcatg-cagaggggctctcaagccagaatggaatacttaaacaaat 359
Query: 300 aaagctaccttgactttttctggcttaaattcttcaataatcacattacttgtgggccaa 359
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 358 aaagttaccttgactttttctggcttagattcttcaataatcacattacttgtgggccaa 299
Query: 360 gttagaattccagggagacgactaattaaagtctttgctttttcaaagtgattaagagct 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 298 gttagaattccagggagacgactaattaaagtctttgccttttcaaagtgattaagagct 239
Query: 420 tcgagaaatctaaagacataattgggaagaaagaaga 456
|||||||||||||||||||| ||||||||||||||||
Sbjct: 238 tcgagaaatctaaagacatatttgggaagaaagaaga 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_l06.g1 MSMg01no349_l06.g1 CHROMAT_FILE:
MSMg01no349_l06.g1 PHD_FILE: MSMg01no349_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:24 2005
(460 letters)
>mm_chr16_94456792_94457651
Length = 860
Score = 766 bits (396), Expect = 0.0
Identities = 450/482 (93%), Gaps = 22/482 (4%)
Strand = Plus / Plus
Query: 1 agtgaatgaattcagaatttcattcacagtgaaataagcagtagagg------------- 47
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agtgaatgaattcagaatttcattcacagtgaaataagcagtagaggatgtgggagccaa 238
Query: 48 ---------gagagggcaacgtaggtccaaatccggggaccaccagaggcagatgttgag 98
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 239 gagcccagggagagggcaacgtaggtccaaatccggggaccaccagaggcagatgatgag 298
Query: 99 tgaaagccaggagatagcaaaagataatgaagatgtggtgtgtgttaaaagaaaaggttg 158
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgaaagccagaagatagcaaaagataatgaagatgtggtgtgtgttaaaagaaaaggttg 358
Query: 159 taaatgggctgaattcattctctgaggtctggtaacaatggctacacagaggggggctat 218
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 359 taaatgggatgaattcattctctgaggtctggtaacaatggccacacagagggggcctat 418
Query: 219 acaggacagcaatgaaacatagctgtcaaggccaccggtcaaatcaaggtgaggcagaac 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acaggacagcaatgaaacatagctgtcaaggccaccggtcaaatcaaggtgaggcagaac 478
Query: 279 caggctccctctaaaggcttactacattgtgactgtgtcgtggttctcagtgagatcatg 338
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 caggcttcctctaaaggcttactacattgtgactgtgtcgtggttctcagtgagatcatg 538
Query: 339 ttgagagatgagatctttcagaggcaattttttcgaggctttgggcgctctacacaaacc 398
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct: 539 ttgagagatgagatctttcagaggcaattctttcgaggctttgggtgctccacacaaacc 598
Query: 399 tcccctcttctctaccaccaaccatgaacaggaaactataagtgtgtttaccagaagtat 458
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 599 tcccctcttctctaccaccaaccatgaacaggaaactataagtgtgtttacaagaagtat 658
Query: 459 aa 460
||
Sbjct: 659 aa 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
