BAC Information

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BAC

Clone NameMSMg01-349L08
Chromosome16 (Build37)
Map Location 31,889,441 - 31,889,956
singlet/doubletsinglet
Overlap geneMfi2
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1
Downstream geneLOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349L08.T7 (MSMg01no349_l08.b1)MSMg01-349L08.TJ (MSMg01no349_l08.g1)
ACCAG461499AG461500
length743757
length of high quality
(start - end)		549 (39 - 587)532 (77 - 608)
definitionCHROMAT_FILE: MSMg01no349_l08.b1 PHD_FILE: MSMg01no349_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:24 2005CHROMAT_FILE: MSMg01no349_l08.g1 PHD_FILE: MSMg01no349_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
GAGAGGTACATGGGCGCCATATTAGACATCATCTGCAGAGCCTGGGATGC
AGGAACTGAGGCTCACTGAGCCTCCTGCTGGGTTCTGAGGGTGCCTGGCA
AGACTCTGCTCCTTTCTCCACAGGCCTGGGTGCCTCCTTCCCTGGCTCCT
GTGAAGGCTGTGTGGATGCATCTGCAGCTGAGAGGCAGCTGATCCTGCCC
CTTCTCATCTTTCTGCAGCAAGGTGGCATTCAGAAAGAGCTACCCAGAGA
TAGGCCAGTCTGCCAGGCACTGGGGAATAGATCTCCTCTCTTCCTGGCCT
CCCTTTGCCTTAGTGTCCAGCCAAGGAAGCCAGGAGGACAGACCCGAGTG
GAATAGAGCAACGGATAGAGCTTTACCTGTGGGTTAGGGGGTACCAAGGC
ACCAGAACGTGGGTTAGTGGGTACCAAGGCACCGGAACGTGGGTTAGTGG
GTACCAAGGCAAGTGCTCAGGAAAAGGCCAAAACCAAATGCAGGAAACAG
AAATACCAAGCATTTTTCTATCCCTTCATGCATAGGATGCAATTTTCATA
TATTCCTATTAAATTTTGCGCAATAGATCTTCAAACACAATGAAATCTAT
TTCTAAGTGTGAATTGCCTACAGAAATGTCCAAGCAATAAATGGTGATCC
CCCACTCTCACCCTGTATGGGGGAAACACGTTTAAAGAGATAA

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGAGTTATTGTTTTTAATAGT
TGAGTAGTATTCCATGGTGTAGCCACTATGGCTCAAGATCTCCATACCAA
GATCTAGATAAGGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCT
TCCAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAG
GAATAGCCACTACAGAGGCATATATATATATATTTTTTTAGGGTAAAATG
TTCTATAGATATCTGTTAAATCTATTTGGTTCATAAGTTCTATTAGTTTC
CCTGTATCTCTGTTTATTTTCTGTTTCCATGATCTGTCCATTTGTAAGTG
TTGAAGTCTTCCACTATTATTGTGTGAGGTTCAATGTATGCTTTGAGCTT
TGTTAACGTTTCTTTTACAAATGTGGGTGCCCTTGCATTTGGGGCATAGA
TGTTCAGAATTGAGAGTTCATCTTGGTAGATTTTTTTTTCCTTTGATGAG
GATGAAGTGTCCTTCTTTATCTTTTTTGATAACTTTTGGTTGAAAGTCAA
TTTTATTCAGTATTAGAATGGCTTCTCCAGCTTGTTTCTTGGTACCATTT
GCTTGAGAATTTTTTTCCATTCTTTTACTCTGAGAAAGCGTTTGTCTTTG
CCTCCGAGAGGGAATTCCTGCATGGCATAAACAGCTGGGTCCCGGGTATG
AATCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_l08.b1 MSMg01no349_l08.b1 CHROMAT_FILE:
MSMg01no349_l08.b1 PHD_FILE: MSMg01no349_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:24 2005
         (549 letters)



>mm_chr16_31889314_31890262
          Length = 949

 Score =  868 bits (449), Expect = 0.0
 Identities = 508/547 (92%), Gaps = 32/547 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggagaggtaca-tgggcgccatattagacatcatctgcagagcctgggatgc 62
           ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggaattcaggagaggga-agtgggcgccatattagacatcatctgcagagcctgggatgc 585

                                                                       
Query: 63  aggaactgaggctcactgagcctcctgctgggttctgagggtgcctggcaagactctgct 122
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggaaatgaggctcactgagcctcctgctgggttctgagggtgcctggcaagactctgct 525

                                                                       
Query: 123 cctttctccacaggcctgggtgcctccttccctggctcctgtgaaggctgtgtggatgca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cctttctccacaggcctgggtgcctccttccctggctcctgtgaaggctgtgtggatgca 465

                                                                       
Query: 183 tctgcagctgagaggcagctgatcctgccccttctcatctttctgcagcaaggtggcatt 242
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctgcagccgagaggcagctgatcctgccccttctcatctttctgcagcaaggtggcatt 405

                                                                       
Query: 243 cagaaagagctacccagagataggccagtctgccaggcactggggaatagatctcctctc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cagaaagagctacccagagataggccagtctgccaggcactggggaatagatctcctctc 345

                                                                       
Query: 303 ttcctggcctccctttgccttagtgtccagccaaggaagccaggaggacagacccgagtg 362
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttcccagcctccctttgccttagtgtccagccaaggaagccaggaggacagacccgagtg 285

                                                                       
Query: 363 gaatagagcaacggatagagctttacctgtgggttagggggtaccaaggcaccagaacgt 422
           | ||||||||| ||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 284 ggatagagcaatggatagagctttacctgtgggttagggggtaccaaggcacca------ 231

                                                                       
Query: 423 gggttagtgggtaccaaggcaccggaacgtgggttagtgggtaccaaggcaagtgctcag 482
                                   ||||||||||||||||||||||||||||||||||||
Sbjct: 230 ------------------------gaacgtgggttagtgggtaccaaggcaagtgctcag 195

                                                                       
Query: 483 gaaaaggccaaaaccaaatgcaggaaacagaaataccaagcatttttctatcccttcatg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaaaaggccaaaaccaaatgcaggaaacagaaataccaagcatttttctatcccttcatg 135

                  
Query: 543 catagga 549
           |||||||
Sbjct: 134 catagga 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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