BAC Information

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BAC

Clone NameMSMg01-349M09
Chromosome16 (Build37)
Map Location 9,929,619 - 9,929,866
singlet/doubletsinglet
Overlap geneGrin2a
Upstream genenone
Downstream geneLOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349M09.T7 (MSMg01no349_m09.b1)MSMg01-349M09.TJ (MSMg01no349_m09.g1)
ACCAG461548AG461549
length725756
length of high quality
(start - end)
543 (74 - 616)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no349_m09.b1 PHD_FILE: MSMg01no349_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:29 2005CHROMAT_FILE: MSMg01no349_m09.g1 PHD_FILE: MSMg01no349_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGAAGTTGACCTCCAGAGAACAAAATAATCCTATTAAAAATG
GGGAACAGAGCTAAACAAAGAATTCTCAAACCAAGGAATACCGAATGACT
GAGAAGCACCTAAAGAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCTTGAGATTCCACTTCACACCAGTCAGAATGGCTAAGA
CAAAAACTCAGGTGACAGCAGATGCTGGCAAGGATGTAGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGTTATTGTCTAGCTGGTACAACCACTCTGGAA
ATCAGTCTGGTGGCTCCTCAGAAAATTGGACATAGTACTACCAGAGGACC
CAGCTATACCACTCCTGGGCATATACCCAGAAGATGCTCCAACATGTAAT
AAGGACACGTGGTCCACTATGTTCATAGCAGCCTTATGTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTATACAATGGAATATTACTCAGCCATTAAAAACAAAGAA
TTTATGAAATTCTTAGGCAAATGGATGGAACTAGAAATTATCATCCTGAG
TGAGGTAATCCAATCAAAAAAGAACACACATGGAATACACTCACTGATAA
GTGGATATTAGGGGCGTTAGATATC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCATCAAAGAAGACCCTCTGCG
CATCAACAGCTACAGCAGCCTTCAGATGAGGGCAAAAGAGTTCTAACTGG
CTTAGGTCAAGTGTTTGAATATCAGAGGGACTATTCCTGGTCAACACAGA
GCTAAATCAAACAAAAATTGTAAGCTGAGCCAATAAGGTGGGAATATTCT
TGCTTCATCTCTTAAAAGAATTGTTTGACATAAGACAGTCTGCCAGCTCT
AAAGAGGTTCCTAGCAATTTGAAAAGTGTTCTATGCAGAGGGACAAATAA
CAGAAATAAGGTTCATACACAAGCTGTTTATCACAGCATTACTAATGTTG
GTAACAGTTTCCATAAAAATAACCCAGGCATCCAACACTGGGCAAGTTGG
TAAATGAACATCATTGCAACATCTCCTCACAGAAGTATTAAAAATGAGAC
TCACAGACATAGTGGCATGCACCTGTATCAGCAACACGCAGATGTTGAAG
CAAGAGGATCATGGGTTTGAAATAAGAGTAGGTTGCCTACTTCTGTCTCC
AAAGAATAAGCAAAATAAAACATGATGCTTACAGATAATGTGATAGTAAG
TAAAAAACCTGTTTGACATGCCCCATTGTGGATAGACACCACTAGTCTAA
TACCGATATTGCCTACCGAGAGAGAGCGATCTCACCCCTTTCCTTCCCCT
TTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_m09.g1 MSMg01no349_m09.g1 CHROMAT_FILE:
MSMg01no349_m09.g1 PHD_FILE: MSMg01no349_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:29 2005
         (248 letters)



>mm_chr16_9929419_9930066
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcatcaaagaagaccctctgcgcatcaacagctacagcagccttcagatgagggcaaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 attcatcaaagaagaccctctgcgcatcaacagccacagcagccttcagatgagggcaaa 260

                                                                       
Query: 61  agagttctaactggcttaggtcaagtgtttgaatatcagagggactattcctggtcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagttctaactggcttaggtcaagtgtttgaatatcagagggactattcctggtcaaca 320

                                                                       
Query: 121 cagagctaaatcaaacaaaaattgtaagctgagccaataaggtgggaatattcttgcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagctaaatcaaacaaaaattgtaagctgagccaataaggtgggaatattcttgcttc 380

                                                                       
Query: 181 atctcttaaaagaattgtttgacataagacagtctgccagctctaaagaggttcctagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctcttaaaagaattgtttgacataagacagtctgccagctctaaagaggttcctagca 440

                   
Query: 241 atttgaaa 248
           ||||||||
Sbjct: 441 atttgaaa 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)