BAC Information

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BAC

Clone NameMSMg01-351P20
Chromosome16 (Build37)
Map Location 26,008,656 - 26,008,922
singlet/doubletsinglet
Overlap geneLeprel1
Upstream gene5430420C16Rik, Trp63, LOC100043571
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351P20.T7 (MSMg01no351_p20.b1)MSMg01-351P20.TJ (MSMg01no351_p20.g1)
ACCAG463228AG463229
length749754
length of high quality
(start - end)		556 (55 - 610)237 (85 - 321)
definitionCHROMAT_FILE: MSMg01no351_p20.b1 PHD_FILE: MSMg01no351_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:22 2005CHROMAT_FILE: MSMg01no351_p20.g1 PHD_FILE: MSMg01no351_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCATCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCG
AGGATCCGCGGAATTCAAGGTCCATATCTAAACATAAAGGAAGCAATTTA
CTGCAAACCAATAGCCAATATCAAATTATATGGAGACATACTTGAAGCAA
ATCCACTGAAATAGGGGATAAGACAAGGATGCCAACTCTCCCCATATCTA
TTCTTTATAGCTCATAGTGTTAGCTAGAACAATAAGACAACAAAAAGACA
TCAAGTGGGTACAAGTTGGCAAAGAAGAAGTAAACATTTCTCTATTTGCA
GATGATATGATAGTATACATAAGTGACCCCCAAAATTCTACCACAGAACT
TATTCTAGCTGATAAACAACTTCAGCAAAGTAGCTGGATATAAAATTAAC
TCAAGTAAATCAGTAGCCTCCCTTTATACAAATGATAAACAGGCTAAAAA
AGAAATTAGGGAAACAATTCCCTTCACAATAGCCACAAATTCTTTTTTTT
TTATAGAGGACACGTTTATTTTAATTTAGAGTATTGGAGTTTTAGTCTTT
AGAGTATTGGAGTTTTAGGTGCCATTGGTTTTCTTTTTTTTTAAATTTTT
TATTATTACATATTTTCCTCATTACATTTAGAATGCTATCCCAAAAGTCC
CCCATAACCTTCCCCCCCACTTTCCCTACCAACCCATTTCCCATTTTTGG
GCCCTGGCATTCCCCTTGTACTGGGGGAATAAAAAAGTTTTGCGTGGCC

CTTTTTTTACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGTATAGGTAGAGA
CTTCAATTTCATAAATAAAGTAAAGAATGATTGAGAAAGACATACAAAGT
CAACTTTGGGCAATATACACATCCACACAGGTGCATATGAACCTGGACAC
ACATATATTCCCACACCCATGAGAACACACACACAGTGCACAAATATAAA
AAAGAAAGAGAGAGAGAGAGAAAGAGAGAAAGATTGGGAGAGAGGGATGG
AGGGAAGGAGGGAGGGAGGNANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTNNNNTNNNNNCNNNNNNNNNNNNNNNNNNNTNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNTTTTTTTTTTTTCTTCCCCTCTT
TCCTCTCTTCTCCCTCTTTCCCTTTTTCTCCCCCTCCCTCCTTTTCCCTT
TTTCTTCCCCTCTTTCCCCCCCTCCTTTTCTTCTTCTTCTTCTCTTCTTC
TCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_p20.g1 MSMg01no351_p20.g1 CHROMAT_FILE:
MSMg01no351_p20.g1 PHD_FILE: MSMg01no351_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:22 2005
         (237 letters)



>mm_chr16_26008456_26009092
          Length = 637

 Score =  286 bits (148), Expect = 6e-82
 Identities = 223/270 (82%), Gaps = 38/270 (14%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagtataggtagagacttcaatttcataaataaagtaaagaatgattgagaaagacata 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtataggtagagacttcaacttcataaataaagtaaagaatgattgagaaagacata 260

                                                                       
Query: 61  caaagtcaactttgggcaatatacacatccacacaggtgcatatgaacctggacacacat 120
           ||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 261 caatgtcaactttgggcaatatacacatacacgcaggtgcatatgaacctggacacacat 320

                                                                       
Query: 121 atattcccacacccatgaga--------------------------------acacacac 148
           |||| |||||||||||||||                                ||||||||
Sbjct: 321 atatgcccacacccatgagagcatacacacacacacacacacacacacacacacacacac 380

                                                                       
Query: 149 acagtgcacaaatataaaaaagaaagagagagagagagaaagagagaaagattgggagag 208
           |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 381 acagagcacaaatataaaaaagaaagagagagagagagaaagagagaaagagagggagag 440

                                         
Query: 209 agggatgga--ggga-aggagggagggagg 235
           |||||  ||  |||| || ||| |||||||
Sbjct: 441 aggga--gaaagggagag-aggaagggagg 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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