NNCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTANATTTTACTCTTTTATCATTAGCTTCATTAGTTAAAT
TTATTTCAGGTAATTTTTATGAGTGAGACTGTGTCCTTGATTAACTTCTC
AATGAACTCAGTTGAGTAATAAAAATGCCATGTAGTATTATAGAACTTTA
CTAAATTTATATATTATTTAAAACCAGTCTAGAGTGATGTATTTTTTTTT
TAATGTTTAAAATAATGACACCTACATGCAGGAGCAATATTGCCCTTCCC
TGCTAATTAGATGTCTTGTTCCTTCTGTTTTCACACTGGAGCACTGACAG
TATTAGGATGGAGGAGAAAGTCGGCTTCATCCATTCATTCTGGTTGTTGT
GGGCTTCTCATTCGTAGCATTACTATGTTGATGTATGTTCTACCCAGGCT
TGATTTTTTTTTTGAGTGGTTTTATCATGAGTGGGTGCTGAGCTTTATCA
AATGCTTTCTCCACATCCGATGAAACCATCACAAGGTTGTTGTCCTGTGT
GGCAATCTGATACTTTTACATGCAATAGCCTGTGATGTGATCTGATAAAT
TACATGCACACATCTGTGGGTGTTCCACTGGGGGGGCTTCCATTCCCTCG
TGACCCCTTTTTTTTTACTTTTCATCAAGTTTGGTCTTACCCTGTTTCCC
AAATAAGATTTTTGTATTTCCTTCTCTTCACCTTTTTTTTCTACCTACCT
CTCCTTTCG

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATCTGCCTGCCAGTTAAAC
ACAGATAAGAAGCTAGTTGGGTGGGACCCAGTCCTGAAATCACTATTTCT
ACCACACCTGGACCTAACCTTGCTCTGTCCCAGGCTGACCTTGAACTCAG
GAATCCGCCTGCATTGGTATTGGTAACTGCCTGTCTTTGTATCTTTCTGA
CAAGCAGGCTTATTGTATAGCTTCCTCTGTTCTTTTAGACTAGTGAAGCC
CCTCATATAATGCTTAGTTTTTGCATAGTTGAAAAATTATACATTTTTAA
ATCCATGTTTTTAGAGTTCTTTTCCACAGCTATAAGGGCTGTCCTGAAGG
TCCCAGGATTTACCATTTTCCCGAGACTTTAGCTCCACCTTTGCCTCCTG
GGCTCTTGCTGTCTCTGATTATCATGGGGTCATTAACGTTAACAGGGAGG
ACATTCCTTATAGGAAGAATGTANAATATTATACNAACTAGCCTTATGCC
CACAGCAGCCTCAACGTTCATTTCTGGAGACCCCCTATGGTTATCCCTGC
CCCAGGGGCCCAAATATGGTATTTGTGTTCCTAAGGGCTTGGCAAACCCG
CCCACAAAGAGAAACCATATAAGTGTGGGCCTTCCCAAGGTTGGGACTTT
GCAAAAAAACAATTTGGAACCCCACAATGTCCCTGTTCGTAAAATTTGGG
TACAAATTTTCCTCCCCCCCTTCATCTTCCATACAACA

Query= MSMg01no352_c21.b1 MSMg01no352_c21.b1 CHROMAT_FILE:
MSMg01no352_c21.b1 PHD_FILE: MSMg01no352_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:37 2005
         (490 letters)



>mm_chr16_63123336_63124223
          Length = 888

 Score =  876 bits (453), Expect = 0.0
 Identities = 477/486 (98%), Gaps = 3/486 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttanattttactcttttatcattagcttcattagttaaatttatttcaggtaat 64
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gaattcttaaattttattcttttatcattagcttcattagttaaatttatttcaggtaat 638

                                                                       
Query: 65  ttttatgagtgagactgtgtccttgattaacttctcaatgaactcagttgagtaataaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 637 ttttatgagtgagactgtgtccttgattaacttctcaatgaactcagttgagttataaaa 578

                                                                       
Query: 125 atgccatgtagtattatagaactttactaaatttatatattatttaaaaccagtctagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atgccatgtagtattatagaactttactaaatttatatattatttaaaaccagtctagag 518

                                                                       
Query: 185 tgatgtattttttttttaatgtttaaaataatgacacctacatgcaggagcaatattgcc 244
           |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 517 tgatgta--ttttttttaatgtttaaaataatgacacctacatgcaggagcaatgttgcc 460

                                                                       
Query: 245 cttccctgctaattagatgtcttgttccttctgttttcacactggagcactgacagtatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 459 cttccctgctaattagatgtcttgttccttctgttttcacactggaggactgacagtatt 400

                                                                       
Query: 305 aggatggaggagaaagtcggcttcatccattcattctggttgttgtgggcttctcattcg 364
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 399 aggatggaggagaaagtcggcttcatccactcattctggttgttgtgggcttctcattcg 340

                                                                       
Query: 365 tagcattactatgttgatgtatgttctacccaggcttgattttttttttgagtggtttta 424
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 339 tagcattactatgttgatgtatgttctacccaggcttga-tttttttttgagtggtttta 281

                                                                       
Query: 425 tcatgagtgggtgctgagctttatcaaatgctttctccacatccgatgaaaccatcacaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcatgagtgggtgctgagctttatcaaatgctttctccacatccgatgaaaccatcacaa 221

                 
Query: 485 ggttgt 490
           ||||||
Sbjct: 220 ggttgt 215


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 888
Length adjustment: 10
Effective length of query: 480
Effective length of database: 878
Effective search space:   421440
Effective search space used:   421440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)