Query= MSMg01no352_f18.b1 MSMg01no352_f18.b1 CHROMAT_FILE:
MSMg01no352_f18.b1 PHD_FILE: MSMg01no352_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:52 2005
(475 letters)
>mm_chr11_102138171_102139045
Length = 875
Score = 866 bits (448), Expect = 0.0
Identities = 466/472 (98%)
Strand = Plus / Minus
Query: 4 ggaattcccaccatttcctagctgactgatttatgaatgtctgtcagcaagaggctccgc 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggaattcccaccaagtcatagctgactgatttatgaatgtctgtcagcaagaggctccgc 616
Query: 64 agtatagaagatcaaagttctgtctgcactgctccagacaggccaggaacccagggcttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agtatagaagatcaaagttctgtctgcactgctccagacaggccaggaacccagggcttt 556
Query: 124 caccctcttttgtctgaggtccatcttcctcctctgaacctggtcttggagcttgaaggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caccctcttttgtctgaggtccatcttcctcctctgaacctggtcttggagcttgaaggg 496
Query: 184 agaggcctctggccgctctagcctccctagtaaagaacttggcccttggcgtggacatac 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agaggcctctggcctctctagcctccctagtaaagaacttggcccttggcgtggacatac 436
Query: 244 ctgccacagctccgggagcacggcctccacccttgggtcacaggatggaacacatgggta 303
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 435 ctgccacagctccgggagcacggcctccacccaggggtcacaggatggaacacatgggta 376
Query: 304 ggcattaaggaggacttccagggcccgaggaaagttggcacagtgtttcagcatctggaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggcattaaggaggacttccagggcccgaggaaagttggcacagtgtttcagcatctggaa 316
Query: 364 atcaaaataggagtttaggagttccgtgttgccccaactgaggcaagcccgaggctggct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atcaaaataggagtttaggagttccgtgttgccccaactgaggcaagcccgaggctggct 256
Query: 424 aatataaattgccgcagacaacctggtctttctcgagcctcagcttgccctg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aatataaattgccgcagacaacctggtctttctcgagcctcagcttgccctg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_f18.g1 MSMg01no352_f18.g1 CHROMAT_FILE:
MSMg01no352_f18.g1 PHD_FILE: MSMg01no352_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:52 2005
(362 letters)
>mm_chr16_56361115_56361876
Length = 762
Score = 638 bits (330), Expect = 0.0
Identities = 358/376 (95%), Gaps = 14/376 (3%)
Strand = Plus / Plus
Query: 1 tggcgtgactagtattcagaatttcttaggcttagccagctggcaagccatgacactaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tggcgtgactagtattcagaatttcttaggcttagccagctggcaagccatgacactaaa 246
Query: 61 ggattgaatctgatattctgactccctggtacataa--------------acacacacac 106
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 247 ggattgaatctgatattctgactccctggtacataaacacacacacacacacacacacac 306
Query: 107 acacacacacacgcacacaagtgtgcattacaaccctctcccccattatgttatactgta 166
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 307 acacacacacacacacacaagtgtgcattacaaccctctcccccatcatgttatactgta 366
Query: 167 gttgtagaaatctctaaataggatcatgataaaaactggatgcagtatggcttatatcat 226
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 367 gttgtagaaatttctaaataggatcgtgataaaaactggatgcagtatggcttatatcat 426
Query: 227 ctagcatatcattactttaaaaatagatattgttaaggtcttgggtttgtctttctggca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctagcatatcattactttaaaaatagatattgttaaggtcttgggtttgtctttctggca 486
Query: 287 cattacatcagtagccagctttgtaaaacaaatacaatgttattggaaatactactttaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cattacatcagtagccagctttgtaaaacaaatacaatgttattggaaatactactttaa 546
Query: 347 attccttatttgagga 362
||||||||||||||||
Sbjct: 547 attccttatttgagga 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
