Query= MSMg01no352_g01.b1 MSMg01no352_g01.b1 CHROMAT_FILE:
MSMg01no352_g01.b1 PHD_FILE: MSMg01no352_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:54 2005
(270 letters)
>mm_chr16_44728143_44728814
Length = 672
Score = 503 bits (260), Expect = e-147
Identities = 266/268 (99%), Gaps = 2/268 (0%)
Strand = Plus / Minus
Query: 5 gaattctctagctgtcaggaacgcccaccataggtgctccctggactgcaccaacatggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattctctagctgtcaggaacgcccaccataggtgctccctggactgcaccaacatggc 413
Query: 65 aaaggattatgggaattgatcctggtcagagctgttatattttcagagctacatatatac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaaggattatgggaattgatcctggtcagagctgttatattttcagagctacatatatac 353
Query: 125 tgctgaaaactagtcacacttatgggctctacctca-catagctcggtcctt-aattcac 182
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 352 tgctgaaaactagtcacacttatgggctctacctcagcatagctcggtccttaaattcac 293
Query: 183 tggggctggctttttaatgtccaagtctggacaccatcttttcagatagttattaacagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tggggctggctttttaatgtccaagtctggacaccatcttttcagatagttattaacagc 233
Query: 243 ccaagacagtaacacttggaaaatagtg 270
||||||||||||||||||||||||||||
Sbjct: 232 ccaagacagtaacacttggaaaatagtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 672
Length adjustment: 9
Effective length of query: 261
Effective length of database: 663
Effective search space: 173043
Effective search space used: 173043
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no352_g01.g1 MSMg01no352_g01.g1 CHROMAT_FILE:
MSMg01no352_g01.g1 PHD_FILE: MSMg01no352_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:54 2005
(420 letters)
>mm_chr16_44548575_44549391
Length = 817
Score = 683 bits (353), Expect = 0.0
Identities = 412/455 (90%), Gaps = 38/455 (8%)
Strand = Plus / Plus
Query: 1 acagttatggaccctgtggctaccagggatacctatatttcattgttggaaaaactctct 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 166 acagttatggaccctgtggctaccagggataactatatttcattgttggaaaaactctct 225
Query: 61 ctctctctctctc----------------------------------cccaccccactct 86
||||||||||||| |||||||||||||
Sbjct: 226 ctctctctctctctctctctctctctctctctctctctctctctctccccaccccactct 285
Query: 87 cgcccccagacaaagtttcttt-tgtagtcctggctgtacttgttgtagaccagactggc 145
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 286 cgcccccagacaaagtttctttgtgtagtcctggctgtacttgttgtagaccaggctggc 345
Query: 146 ctccaactcagagatctgcctcccaagtgctgggattaaaggtgtgtgccaccaccaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 346 ctccaactcagagatctgcctcccaagtgctgggattaaaggtgtgtgccaccactaccc 405
Query: 206 agctccttgttggaaactcttatcacatgaggttttaaggttgataggagtcttacagat 265
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 406 agctccttgttggaaactcttatcacatggggttttaaggttgataggagtcttacagat 465
Query: 266 gtctattctagacacagaagggctttgatgaacaaaacaaagtcttgacctcattttgcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtctattctagacacagaagggctttgatgaacaaaacaaagtcttgacctcattttgcg 525
Query: 326 gagaagaaggtgatgtgttaatgaacaaataagtatatgtcaggaagtgacagcatgagg 385
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gagaag---gtgatgtgttaatgaacaaataagtatatgtcaggaagtgacagcatgagg 582
Query: 386 aagtgtggttagcctgaagggagagatggatggtg 420
|||||||||||| ||||||||||||||||||||||
Sbjct: 583 aagtgtggttagtctgaagggagagatggatggtg 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 817
Length adjustment: 9
Effective length of query: 411
Effective length of database: 808
Effective search space: 332088
Effective search space used: 332088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
