BAC Information

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BAC

Clone NameMSMg01-352M01
Chromosome16 (Build37)
Map Location 78,453,741 - 78,454,219
singlet/doubletsinglet
Overlap genenone
Upstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3
Downstream geneD16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M01.T7 (MSMg01no352_m01.b1)MSMg01-352M01.TJ (MSMg01no352_m01.g1)
ACCAG463801AG463802
length733762
length of high quality
(start - end)
475 (54 - 528)285 (84 - 368)
definitionCHROMAT_FILE: MSMg01no352_m01.b1 PHD_FILE: MSMg01no352_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:24 2005CHROMAT_FILE: MSMg01no352_m01.g1 PHD_FILE: MSMg01no352_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCGCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATAACTCGTTCCAAAAAAAAAAAGTTTGTCCACCTTT
GGATAAAAGAAATACTAGTAGGGAATACATATGACTTTTTTTTTCTACTA
AAAAGCATCACGTATCCTTCTAGGATCAGCCCACACGTGATATGCTGTAT
CATACTCTATTTTTTTCTAAGTTCACTTACCTTTGATCTTCTGCTTTAGG
TAACAATATACAAATTCTTTGATGATCTTACTGGTGATTAAAGCAGCAGA
ACAAAGGCCTGAAATGATCTATCAGTAAGATTAAAAGAGCAGAATAACCA
TGATTGACGTGATGGAGACATTTTACAAGGACCCACCACTGGGTGAAGAG
CTACAGACAATCATGAGGAAGGGGGAAGGAAGCCCCTTGAATATCCAATG
TCAAGTGGACAAGTGGACACACATGCACACAAGTAATACTAACTGAGCCC
AATAGGAGGTGTGTGTGTGTGTGTGTGCGCGACACACACACACACATTTT
CATCCTTCCCCCTCCCCACACCTTTCCTTCCCTTTCCCCCTTTCAACACA
CTTTCCCCCCCCCAATCTCACCCCCTCTTTCCACTACCTCTACCCCACCC
CCCTTATTTCCTTTTTCTTCCTTCCCTTCCCGCTTCCCCCCTCCCTTTGC
TTTTTCTCCGCCCTTTTCCCTCTTTCTCCGCTC
ATAAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGACTGTACTTCGTAGCCACGATGCCTCAAT
GCCAAGATCCAGGTCAGACACTTGTGTCTGCCAGCCTCCAGATTAGCATC
ACAGGTGAGCCTTCCAATTCTGGATTGTAGTGCATTCCCGATATAGTCAA
GTTGACAACCAGGACTAGCCACTACAGTGGGTAAAAGTGCTTACTACCAA
GCCTGATGACCTGGGCTTGATCTCTGAACCGTACATGGTGGAGGAGAGAA
CCAACTCCCATAAGTTGCCCTCTGACTATATATGGTACACACACACACAC
ACACACACACACACATTTATTTTCTCACACCCACACATACACACACACAC
ATATATATACACACNTATTCNCCTATACTCATACACACATATACCCATAC
TCACATATTCCCATACACACTATCTCACACACNCNCTTTTCACTACATAT
TCCCCTTCCTTCCTATTCTTGATTACACCTGCCTCCATTTCTCCCGACCC
ATTATAGCGATAATTCTTCGCTCCCCCGCACCGTCTCTTACGCGTTTCCT
ATTCCCTTTGCNTGCCCTTTTTTCCCGGACTTCCTCGTTCTCCCACCTTG
TGGGTTAAGACATCTCGCTCTCTTTCCCTGTTTCTTATCCCGCAGCTCGG
CTAGCCTGGTCCGCCCCTTTTCCTTCCCTTTTTCCGTACTCCCCTATTCT
AGACCATTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m01.b1 MSMg01no352_m01.b1 CHROMAT_FILE:
MSMg01no352_m01.b1 PHD_FILE: MSMg01no352_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:24 2005
         (475 letters)



>mm_chr16_78453657_78454532
          Length = 876

 Score =  774 bits (400), Expect = 0.0
 Identities = 457/480 (95%), Gaps = 10/480 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcataactcgttccaaaaaaaaaaagtttgtccacctttggataaaagaaatact 63
           |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaattcataactctttac-aaaaaaaaaagtttgtccacctttggataaaagaaatact 505

                                                                       
Query: 64  agtagggaatacatatgactttttttttctactaaaaagcatcacgtatccttctaggat 123
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 agtaggaaatacatatgactttttttttctactaaaaagcatcacatatccttctaggat 445

                                                                       
Query: 124 cagcccacacgtgatatgctgtatcatactcta-tttttttctaagttcacttacctttg 182
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 cagcccacacgtgatatgctgtatcatactctattttttttctaagttcacttacctttg 385

                                                                       
Query: 183 atcttctgctttaggtaacaatatacaaattctttgatgatcttactggtgattaaagca 242
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 atcttctgctttaggtaacaatatacaaattctttgatgttcttactggtgattaaagca 325

                                                                       
Query: 243 gcagaacaaaggcctgaaatgatctatcagtaagattaaaagagcagaataaccatgatt 302
           ||||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||||
Sbjct: 324 gcagaacgaaggcctgaaatgatctatcagtaagagcaaaagagcagaatgaccatgatt 265

                                                                       
Query: 303 gacgtgatggagacatttt-acaaggacccaccactgggtgaagagctacagacaatcat 361
           || |||||||| ||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct: 264 gatgtgatggaaacatttttacaaggactctccactgggtgaagagctacagacaatcat 205

                                                                       
Query: 362 g-------aggaagggggaaggaagccccttgaatatccaatgtcaagtggacaagtgga 414
           |       ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggctgctgaggaagggggaaggaagccccttgaatatccaatgtcaagtggacaagtgga 145

                                                                       
Query: 415 cacacatgcacacaagtaatactaactgagcccaataggaggtgtgtgtgtgtgtgtgtg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 cacacatgcacacaagtaatactaactgagcccaataggaggtgtgtgtgtgtgtgtgtg 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space:   402690
Effective search space used:   402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)