BAC Information

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BAC

Clone NameMSMg01-353E06
Chromosome16 (Build37)
Map Location 17,928,387 - 17,928,629
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1
Downstream geneVpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353E06.T7 (MSMg01no353_e06.b1)MSMg01-353E06.TJ (MSMg01no353_e06.g1)
ACCAG464185AG464186
length752782
length of high quality
(start - end)
450 (51 - 500)243 (82 - 324)
definitionCHROMAT_FILE: MSMg01no353_e06.b1 PHD_FILE: MSMg01no353_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:05 2005CHROMAT_FILE: MSMg01no353_e06.g1 PHD_FILE: MSMg01no353_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGTCATCTCGCTTGGCAGAAAGCACCCTTATTCACTGAA
CCATTTTATCAGACCTGTGAGGTACACACCTATAATCCCTGTATTTGGAA
GGAGGAGGCAGGAGGGTCAAGCTACATAGGGAGTGCAAGGCCAGCCTGGG
TTTCATGAGACCCTGTATAAAAACAAAGAAAGCCCCCCAAGAGGCCAGTG
TTAAAGCTCAGTAGGTAAAGGCATTTGCCTCATAATATTGGCAATTTGTA
ATTGATCCCTGGAACCCATACAAAGGTTTAGAATAGACTTCACAAAGATG
ACCTCTGACCTTACATGCATGTGGTGGTATCTTGTGTTGTCTCTTTCTCT
CCCAGCCCATGAACACACACACACACACACACACACTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATACAAACAAAAACAAAC
TACAATATGATTGTAATAAAGAGGAGCTTGGTTAGCTAAATATGGTCATA
TATACCTGTGATTCTAGCGCTTGGAAGACGAAGGCTGGATGAGGATTGGG
AGCTAAAGGCCTGTGCTCTAATTATTAAGTTCACAGTCTGCTTTTGTTCT
TTTTATGACCTTGTGAGTGTCGTTGATTTACATGTCCCATCCTTTCTGAT
ATTATGTTTAAACATCTCTTAATCTTACATTTCTATTGGAAAAACTGGTT
GG
TTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCACCGGGGTGGATGTG
TCCCTACATCGCCCCCAGGATCTCGAGGCCCACCTTAACCCCAAGGCGCG
CTCCAGACGCACGTGTCTCTAAACTGCACCTTGACCCACTGCTACCCGCC
TTGGCTTAGCGTTGCTGTCCGGAGACCACGCCTCCGGCGGTGTTCTCCGT
CTCCCCGGAATCCAGCACCGGCCATTGGCTGCTCTCAGCTCTCCGCCCCG
ACGCGTGCCCCAGTGCATCCCGCCCATTTCTCAGTTTCCCGGCTGGCACG
GGGCGTGGCGTGGGCTGTTCTCATCTCACGCCACGCGGCGCGGAGTCCGT
TAGCTGACGTGATCACCCCGCCTCCCGGATCATAATTGTCCGTGTTCTCA
CTAAACTTCGCCTCTCCCGTTCCTTATTACCCCTTTTCGCAATCTCGTAC
TACCATATCAGTCCGTTCGTATCTTCCTTCCGCTTTTCTTGCTTCGCCTT
CTCTCCCTCCTCCCCCTTTCATTCCCTTCCCCCTACCCTTCCCCTTCCCT
ATTTCCATTCCCTTTTTTTTCCTCTCCCATCCCTTATTTTTTCCCCCTTC
TCTCCTAATCTTATCCTTCCCCTTCCATCTCTTTTTTCCCCCTTTTTCCC
CTTTTTTTCTTTCCTTCCCCTTACCCCTTTCCCCTTTCCCCTATCTAACC
ATACCTATCTCCTTTCCCTTTATATCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_e06.g1 MSMg01no353_e06.g1 CHROMAT_FILE:
MSMg01no353_e06.g1 PHD_FILE: MSMg01no353_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:05 2005
         (243 letters)



>mm_chr16_17928187_17928829
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgcaccggggtggatgtgtccctacatcgcccccaggatctcgaggcccaccttaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acgcaccggggtggatgtgtccctacatcgcccccaggatctcgaggcccaccttaaccc 384

                                                                       
Query: 61  caaggcgcgctccagacgcacgtgtctctaaactgcaccttgacccactgctacccgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaggcgcgctccagacgcacgtgtctctaaactgcaccttgacccactgctacccgcct 324

                                                                       
Query: 121 tggcttagcgttgctgtccggagaccacgcctccggcggtgttctccgtctccccggaat 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 323 tggcttagcgttgctgtccggagaccacgcctccggcggggttctccgtctccccggaat 264

                                                                       
Query: 181 ccagcaccggccattggctgctctcagctctccgccccgacgcgtgccccagtgcatccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccagcaccggccattggctgctctcagctctccgccccgacgcgtgccccagtgcatccc 204

              
Query: 241 gcc 243
           |||
Sbjct: 203 gcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)