BAC Information

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BAC

Clone NameMSMg01-353I06
Chromosome16 (Build37)
Map Location 24,807,124 - 24,934,191
singlet/doubletdoublet
Overlap geneLpp
Upstream geneLOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik, Trp63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353I06.T7 (MSMg01no353_i06.b1)MSMg01-353I06.TJ (MSMg01no353_i06.g1)
ACCAG464373AG464374
length744743
length of high quality
(start - end)		551 (56 - 606)493 (86 - 578)
definitionCHROMAT_FILE: MSMg01no353_i06.b1 PHD_FILE: MSMg01no353_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:25 2005CHROMAT_FILE: MSMg01no353_i06.g1 PHD_FILE: MSMg01no353_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,807,124 - 24,807,670)(24,933,699 - 24,934,191)
sequence
CCCCNAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTTATGTCTTTTATCCTAACTTTAAATGGAAATTT
TACTCTCCTCCCTCATGTTAGTTTGGGTTGCTAGTCTCAGCACCAGTCTT
CACTATGGGGGTCTGTGAGAAGGGTTTATTACAGCCTTGCTTTGATGTGC
TGCTAAATGCATAAAACCTAGAAAGTTACCCTGGACCTTTTCAGGGCGAA
AGAACAAACATGGTGATTCATGGCATTTCAGTTTTTCCTATTTTTGTTTT
GTTTTGTAGTTGTTTGGGTTTTGGTTTTAGCAAGGGTACTCTTAGAACGC
ATCTACATTTATTGAAACAACTGTGAACTTAAAACTCTTAATTTTTTAAA
TCAACTCAGCATTTTACAAATGTTGTCATTAGTCCTTAGACAGGGAAGAG
GCAAAGAAAGAAAAGAGTGGGGAAGAAGAGATGAGGGAAAGAAACGAGAA
ATCGATGAGTCATTGGTTCAAGCTCTAGCTGTGTGAAGCAGTTAACATGT
TGCAATATTTCTGAGGCTGTCAGTATCTTCTGTTTTGGATTCTGTGCAAG
TGATCTTTGTGTCAAAAGATTGATTTTCTTGTCATTANGTATANAAACGT
TAGCAGAGCTCACATTAAAGGAAACTGATGAATAAGTCTTAGCTGTTGTT
TTCCAGCCAATAGTTTTGGTATCTAAAGCTACAGAGCTTCTCCN

TTTTTTTTCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACCCACTACACAT
GAACATTCAAATTTACATTCCAGTCACCACCATAATGAATTTCTAAAGGG
AAATTTTTTGACCTTTAACACATAGGCAATGATTCACTGCTGACAGGGCT
TAATGTGATGGATTTAGAAATCTGATTACCACACTTCCTTGGGAGACTCA
GCTCAAAACAAAACTAACCCTGTTGCACAACAGTAAAAATGAGCTCCGAG
TCTTGTGGATTTGCATGTGTAGCTGAAATCACAATGCGCAACCTTCTGAG
ACCTCTCATCTACTGCGACTAGAACAAGATCTTCCTTTTCTGATAAAATG
CCAGTTTGATCTGCTTACTGTTTAGCAGCTGCAGACAGACTTTTATTCAG
GCTGCGGTAGCACACTCAAAGCTTTCCGATCAACTGGAGAGTTTGCTCTC
AAAATGCTCAGCTGCTTGGTCTCTACCTGGCTCTTCCATTCGTCCTCTGC
CCTCTTGCCCCTGGGATTATGACTACGCATGTGTCAATCTTCCTGCCTTC
ACATCTTCCATCTAGGTTCTTATCCTTGTCCCCTCCTTCCCCTAACATCA
TGTGCCACAGAACCTTCCCTCCTCCCTGAGGAAGTGGCGCCACTAACCCT
GTCCAAAAAATGGCCTCCTCCTGGGAACTCTATGTCCCCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_i06.b1 MSMg01no353_i06.b1 CHROMAT_FILE:
MSMg01no353_i06.b1 PHD_FILE: MSMg01no353_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:25 2005
         (551 letters)



>mm_chr16_24806920_24807870
          Length = 951

 Score = 1027 bits (531), Expect = 0.0
 Identities = 543/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttatgtcttttatcctaactttaaatggaaattttactctcctccctcatgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttatgtcttttatcctaactttaaatggaaattttactctcctccctcatgtt 264

                                                                       
Query: 65  agtttgggttgctagtctcagcaccagtcttcactatgggggtctgtgagaagggtttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtttgggttgctagtctcagcaccagtcttcactatgggggtctgtgagaagggtttat 324

                                                                       
Query: 125 tacagccttgctttgatgtgctgctaaatgcataaaacctagaaagttaccctggacctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacagccttgctttgatgtgctgctaaatgcataaaacctagaaagttaccctggacctt 384

                                                                       
Query: 185 ttcagggcgaaagaacaaacatggtgattcatggcatttcagtttttcctatttttgttt 244
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagggcgaaagagcaaacacggtgattcatggcatttcagtttttcctatttttgttt 444

                                                                       
Query: 245 tgttttgtagttgtttgggttttggttttagcaagggtactcttagaacgcatctacatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttttgtagttgtttgggttttggttttagcaagggtactcttagaacgcatctacatt 504

                                                                       
Query: 305 tattgaaacaactgtgaacttaaaactcttaattttttaaatcaactcagcattttacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattgaaacaactgtgaacttaaaactcttaattttttaaatcaactcagcattttacaa 564

                                                                       
Query: 365 atgttgtcattagtccttagacagggaagaggcaaagaaagaaaagagtggggaagaaga 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 atgttgtcattagtccttagacagggaagaggcagagaaagaaaagagtggggaagaaga 624

                                                                       
Query: 425 gatgagggaaagaaacgagaaatcgatgagtcattggttcaagctctagctgtgtgaagc 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatgagggaaagaaaggagaaatcgatgagtcattggttcaagctctagctgtgtgaagc 684

                                                                       
Query: 485 agttaacatgttgcaatatttctgaggctgtcagtatcttctgttttggattctgtgcaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agttaacatgttgcaatatttctgaggctgtcagtatcttctgttttggattctgtgcaa 744

                  
Query: 545 gtgatct 551
           |||||||
Sbjct: 745 gtgatct 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_i06.g1 MSMg01no353_i06.g1 CHROMAT_FILE:
MSMg01no353_i06.g1 PHD_FILE: MSMg01no353_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:25 2005
         (493 letters)



>mm_chr16_24933499_24934391
          Length = 893

 Score =  946 bits (489), Expect = 0.0
 Identities = 492/493 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacccactacacatgaacattcaaatttacattccagtcaccaccataatgaatttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 acacccactacacatgaacattcaaatttacattccagtcaccaccataatgaatttcta 634

                                                                       
Query: 61  aagggaaattttttgacctttaacacataggcaatgattcactgctgacagggcttaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aagggaaattttttgacctttaacacataggcaatgattcactgctgacagggcttaatg 574

                                                                       
Query: 121 tgatggatttagaaatctgattaccacacttccttgggagactcagctcaaaacaaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgatggatttagaaatctgattaccacacttccttgggagactcagctcaaaacaaaact 514

                                                                       
Query: 181 aaccctgttgcacaacagtaaaaatgagctccgagtcttgtggatttgcatgtgtagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaccctgttgcacaacagtaaaaatgagctccgagtcttgtggatttgcatgtgtagctg 454

                                                                       
Query: 241 aaatcacaatgcgcaaccttctgagacctctcatctactgcgactagaacaagatcttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaatcacaatgcgcaaccttctgagacctctcatctactgcgactagaacaagatcttcc 394

                                                                       
Query: 301 ttttctgataaaatgccagtttgatctgcttactgtttagcagctgcagacagactttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttttctgataaaatgccagtttgatctgcttactgtttagcagctgcagacagactttta 334

                                                                       
Query: 361 ttcaggctgcggtagcacactcaaagctttccgatcaactggagagtttgctctcaaaat 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttcaggctgcagtagcacactcaaagctttccgatcaactggagagtttgctctcaaaat 274

                                                                       
Query: 421 gctcagctgcttggtctctacctggctcttccattcgtcctctgccctcttgcccctggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gctcagctgcttggtctctacctggctcttccattcgtcctctgccctcttgcccctggg 214

                        
Query: 481 attatgactacgc 493
           |||||||||||||
Sbjct: 213 attatgactacgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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