Query= MSMg01no354_g14.b1 MSMg01no354_g14.b1 CHROMAT_FILE:
MSMg01no354_g14.b1 PHD_FILE: MSMg01no354_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:33 2005
(487 letters)
>mm_chr16_3756478_3757364
Length = 887
Score = 698 bits (361), Expect = 0.0
Identities = 367/369 (99%)
Strand = Plus / Minus
Query: 1 ttggtagacttttgaaaactagacttcctaataattaaggctactgccaatatgccttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttggtagacttttgaaaactagacttcctaataattaaggctactgccaatatgccttca 310
Query: 61 aattctagttctagtaatcaggctatgtaaagatagttgaaatatatgatacaaatgtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aattctagttctagtaatcaggctatgtaaagatagttgaaatatatgatacaaatgtac 250
Query: 121 tgttgatactgtctttaatcaaacacattgttttcgtatcaatgcccactgtagtggcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgttgatactgtctttaatcaaacacattgttttcgtatcaatgcccactgtagtggcta 190
Query: 181 ttcctggttgccaacttgactatatttggaatgaactacaatccagaattggaaggctcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcctggttgccaacttgactatatttggaatgaactacaatccagaattggaaggctcg 130
Query: 241 ccagtgaccctaatctggaggttgggagatagaagtttctgatctggatcttggtatgga 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ccagtgaccctaatctggaggctgggagatagaagtttctgatctggatcttggtatgga 70
Query: 301 gatcttgaggcatagtggctatggattccagaagattaaggcagggagatccccgagttc 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 69 gatcttgaggcatagtggctatggattccaaaagattaaggcagggagatccccgagttc 10
Query: 361 aaggtcatc 369
|||||||||
Sbjct: 9 aaggtcatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_g14.g1 MSMg01no354_g14.g1 CHROMAT_FILE:
MSMg01no354_g14.g1 PHD_FILE: MSMg01no354_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:33 2005
(569 letters)
>mm_chr16_3610418_3611386
Length = 969
Score = 1052 bits (544), Expect = 0.0
Identities = 567/584 (97%), Gaps = 15/584 (2%)
Strand = Plus / Plus
Query: 1 tttgatgaggtatcttatgaaaaacagctttcagttagcctgtcattaccctggcatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgatgaggtatcttatgaaaaacagctttcagttagcctgtcattaccctggcatggc 260
Query: 61 tctaaagttagtaaaactctcttccattttgttgaccaattagctgataaactgtagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaaagttagtaaaactctcttccattttgttgaccaattagctgataaactgtagtaa 320
Query: 121 tttacaccacactgatttactctatttgtagaaataaaatccactaaagcatcttatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttacaccacactgatttactctatttgtagaaataaaatccactaaagcatcttatcta 380
Query: 181 gaggggtggtttagaggtcagagcagtgattgctttttcagaggaccagagtttgattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggggtggtttagaggtcagagcagtgattgctttttcagaggaccagagtttgattcc 440
Query: 241 cagcacctatatggcaacttaaaaccatcactaacaccatttccaggagatctgcattat 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcacctacatggcaacttaaaaccatcactaacaccatttccaggagatctgcattat 500
Query: 301 cttctggtctccatgggtaccaggcatgcatgtgatgcatatgtatgcatgcaagccaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttctggtctccatgggtaccaggcatgcatgtgatgcatatgtatgcatgcaagccaaa 560
Query: 361 cactcacataggggtctctgtgacctatttatgacccaaggccagtagagcagcaatcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactcacataggggtctctgtgacctatttatgacccaaggccagtagagcagcaatcca 620
Query: 421 aggaag---------------ttcaaaagaattcaacatgactcagaagtaggtgttggt 465
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggaagatttcaaaaaggcagttcaaaagaattcaacatgactcagaagtaggtgttggt 680
Query: 466 acaacaaccttggagagtctgatagcaagtagtttactttaagcaaatttaagaaaagaa 525
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaacaacctttgagagtctgatagcaagtagtttactttaagcaaatttaagaaaagaa 740
Query: 526 acttgaagaagagttttctgggtataactaacacaatcccatgt 569
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acttgaagaagagttttctgggtataactaacacaatcccatgt 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
