Query= MSMg01no354_h09.b1 MSMg01no354_h09.b1 CHROMAT_FILE:
MSMg01no354_h09.b1 PHD_FILE: MSMg01no354_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:37 2005
(466 letters)
>mm_chr16_57608387_57609256
Length = 870
Score = 866 bits (448), Expect = 0.0
Identities = 466/478 (97%), Gaps = 12/478 (2%)
Strand = Plus / Minus
Query: 1 ggctctgctggttccaaagatggagaatcgctatcttacccatgctcaaatcggttctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ggctctgctggttccaaagatggagaatcgctatcttacccatgctcaaatcggttctgt 766
Query: 61 tctgaacagtaacgtcaacacaacttaccctaaacaatcatactatcatacccttcaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tctgaacagtaacgtcaacacaacttaccctaaacaatcatactatcatacccttcaact 706
Query: 121 ataatagtactgttcagacttctttg------a--ttagatttaggaacagaactgggag 172
|||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 705 ataatagtactgttcagacttctttgtatggcactttagatttaggaacagaactgggag 646
Query: 173 agctctgaggggtcatctaatttatttactttgtgttatagacccccccc----caagcc 228
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 645 agctctgaggggtcatctaatttatttactttgtgttatagacccccccccccgcaagcc 586
Query: 229 cagtaaggttaaaagcttacctgaaactttttcactaaggaacagattttttaaaattac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cagtaaggttaaaagcttacctgaaactttttcactaaggaacagattttttaaaattac 526
Query: 289 actcatactgccgactgataaacattgacaagctaaagtttaagtgacttgtcttctatg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 actcatactgccgactgataaacattgacaagctaaagtttaagtgacttgtcttctatg 466
Query: 349 aaggttgtccagttcaaactcctgagaaatgacccattcatacccaaactctaacagtac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaggttgtccagttcaaactcctgagaaatgacccattcatacccaaactctaacagtac 406
Query: 409 ttattcatatgctatacaggaaaaggggctcaggcaaagctccagtagttgtttcagc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttattcatatgctatacaggaaaaggggctcaggcaaagctccagtagttgtttcagc 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 870
Length adjustment: 10
Effective length of query: 456
Effective length of database: 860
Effective search space: 392160
Effective search space used: 392160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_h09.g1 MSMg01no354_h09.g1 CHROMAT_FILE:
MSMg01no354_h09.g1 PHD_FILE: MSMg01no354_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:37 2005
(466 letters)
>mm_chr16_57459941_57460805
Length = 865
Score = 818 bits (423), Expect = 0.0
Identities = 457/472 (96%), Gaps = 10/472 (2%)
Strand = Plus / Plus
Query: 1 tagagcaaatattaatagaaactgaggtagaagtggccaggaggacgaaggtagagcaag 60
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 201 tagagcaaatattaatagaaactgaggtagaagcggccaggagaacgaaggtagagcaag 260
Query: 61 gagcaaactgacaagatggaaaaagtgatcctgggaccagcaaggctggctggctggcgt 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gagcaaactgacaagatggaaaaagtgatcctgggaccagcaa----ggctggctggcgt 316
Query: 121 cactacaacccaaacagcccttccagaaaacccgccactgtgcttgggagggagaaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cactacaacccaaacagcccttccagaaaacccgccactgtgcttgggagggagaaggca 376
Query: 181 gaaagagctagctcccttccttgctgctgc---ctgtctctttgaactgtcgatccaaat 237
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 377 gaaagagctagctcccttccctgctgctgctgtctgtctctttgaactgtcgatccaaat 436
Query: 238 gcaaagacacctgcctgataggagttcagaagcaaggctaaaagtgcctctcagatcttt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcaaagacacctgcctgataggagttcagaagcaaggctaaaagtgcctctcagatcttt 496
Query: 298 ttgacagagcaactcttaaaaggaaaactaaagaaaaattccagacttcgttttctttt- 356
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 497 ttgacagagcaactcttaaaaggaaaactaaagaaaaatcccagacttcgttttcttttc 556
Query: 357 tttt-ttttttttttttaaaggctggtttggattatcatgataattctcttatttttagn 415
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttttcttttttttttttaaaggctggtttggattatcatgataattctcttatttttagt 616
Query: 416 cattttttt-ataagacaaaacagttgttgacatgggatgatagttgaaaca 466
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cattttttttataagacaaaacagttgttgacatgggatgatagttgaaaca 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 865
Length adjustment: 10
Effective length of query: 456
Effective length of database: 855
Effective search space: 389880
Effective search space used: 389880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
