BAC Information

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BAC

Clone NameMSMg01-354J20
Chromosome16 (Build37)
Map Location 56,175,159 - 56,313,917
singlet/doubletdoublet
Overlap geneSenp7, Impg2
Upstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1
Downstream geneLOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354J20.T7 (MSMg01no354_j20.b1)MSMg01-354J20.TJ (MSMg01no354_j20.g1)
ACCAG465200AG465201
length760767
length of high quality
(start - end)		581 (48 - 628)463 (75 - 537)
definitionCHROMAT_FILE: MSMg01no354_j20.b1 PHD_FILE: MSMg01no354_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:49 2005CHROMAT_FILE: MSMg01no354_j20.g1 PHD_FILE: MSMg01no354_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,313,575 - 56,313,917)(56,175,159 - 56,175,621)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGAGTGTAAATACTTAAACTACATTAGATCCTGTTTGTATTT
GGTATGCTCTTCTAAGTTCCATAGGAGCATCTTCTATTTAACCAATTGCT
TTGTCCCTCATGTCTTCTCAGCAGTAATTAGGTTACCAGGTATTTGAGCT
TCATTTCGGTTGCTGTGATCAAGTTATCTTGACAACGAACAGCTTAGGCT
AAAAATGGTTTATTTCAGCTCGTGGTTCCAGGTTACAGTCCATTGTTGCT
AGGAAGTCAAGGCAGCTGGTCACATCCACAGTCTACACAGAAAGAGAGTA
AATGCTTGCACGTTTACTTATGCAGCCCCTTCTCTACACATATACAGTCC
AGGACCCAAGCTCTGAGAACAGCCCTTCCTACCATGGGCAGTTCTTCTCA
TGTCAGTTAAAGCAATGAAGATAGTCTGCCACTGACATATCCACTGGCAA
ATTTGATCTAGACAATTCCTCATCAAAACTCTCATCTCAAATAATTAAAA
CCAAAATAAAAGCCATAACAAAAAATACTCTTATAAGGGAATTCCATATT
GTAAGAAATTGGCAATCAAAACTAGCTGTCACACCAATTGAATATTCAAG
TTAATAAACCCACATGTAATTTCAAAATATAATAAACTAAAAATGCATAT
AATCTATGTATAACCCCATATTTTATTTTCCATACTCCTTCTAATTTTCC
CAGCTGAAAA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTCTGCCATTCCCTGTTATCATAAT
GGGTGATTTTTCTCTAACGTGATACTTCCCTCATCCTCCCACACACGCAG
ACACACAGATCAGAGTAATATGGAAGATGTGAGGAGCTGCAAGCTGTCCT
GAGTTCTCTGTCTCTGTACGCTTTCCTTTTCAGCACTCTGATCTGTATAC
TTCAGCTACTTAGCTATCTAAAGTTATTAAACTATTAAAGCAGAGTAGGC
TATCAGCAACAGCAGCTTTTTGATTATGAAGGCTATAATCACTAAGCAGG
TAATAAAGTGACATGGAAGAAGTACTTTAATATGGAAGTAGATTAACAAT
TTAAGCTGGAAATACCCACTTAGTATGTGTGTTTTCTAGATTATACTCTC
CGCAGTCTTATATTTATCATGTGATACTTGGTCTACATTCTCTTGAAATT
TCACTTGTTTAGATTGTGATTTATGTTTCTTTTACTGCCATCCTAGCCCA
TATTTTTTTTTTGACTTCAGTGTAAATGTGGTGCTTAATAACATGTTAGC
AATTTGATAAATATTTATTTAATAAGTGGGCAATTTCCACTTTAAGTGAT
TATTTTGAAAGGGCAAGGATAACTAAAGAAAAAGGTGAAAGCCCCCACCC
CAAAAAAAGGCCAATGGCTCTGAATTTATTGGAGGTGAGAAGAATTCCCC
CTAAATAAAGGGATGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_j20.b1 MSMg01no354_j20.b1 CHROMAT_FILE:
MSMg01no354_j20.b1 PHD_FILE: MSMg01no354_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:49 2005
         (581 letters)



>mm_chr16_56313575_56314555
          Length = 981

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgagtgtaaatacttaaactacattagatcctgtttgtatttggtatgctctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaattcatgagtgtaaatacttaaactacattagatcctgtttgtatttggtatgctctt 284

                                                                       
Query: 65  ctaagttccataggagcatcttctatttaaccaattgctttgtccctcatgtcttctcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctaagttccataggagcatcttctatttaaccaattgctttgtccctcatgtcttctcag 224

                                                                       
Query: 125 cagtaattaggttaccaggtatttgagcttcatttcggttgctgtgatcaagttatcttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cagtaattaggttaccaggtatttgagcttcatttcggttgctgtgatcaagttatcttg 164

                                                                       
Query: 185 acaacgaacagcttaggctaaaaatggtttatttcagctcgtggttccaggttacagtcc 244
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 163 acaaagaacagcttaggctaaaaatggtttatttcagctcatggttccaggttacagtcc 104

                                                                       
Query: 245 attgttgctaggaagtcaaggcagctggtcacatccacagtctacacagaaagagagtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 attgttgctaggaagtcaaggcagctggtcacatccacagtctacacagaaagagagtaa 44

                                                      
Query: 305 atgcttgcacgtttacttatgcagccccttctctacacatata 347
           ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 43  atgtttgcacgtttacttatgcagccccttctctacacatata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_j20.g1 MSMg01no354_j20.g1 CHROMAT_FILE:
MSMg01no354_j20.g1 PHD_FILE: MSMg01no354_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:49 2005
         (463 letters)



>mm_chr16_56174959_56175821
          Length = 863

 Score =  888 bits (459), Expect = 0.0
 Identities = 462/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctgccattccctgttatcataatgggtgatttttctctaacgtgatacttccctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtctgccattccctgttatcataatgggtgatttttctctaacgtgatacttccctcat 260

                                                                       
Query: 61  cctcccacacacgcagacacacagatcagagtaatatggaagatgtgaggagctgcaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcccacacacgcagacacacagatcagagtaatatggaagatgtgaggagctgcaagc 320

                                                                       
Query: 121 tgtcctgagttctctgtctctgtacgctttccttttcagcactctgatctgtatacttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcctgagttctctgtctctgtacgctttccttttcagcactctgatctgtatacttca 380

                                                                       
Query: 181 gctacttagctatctaaagttattaaactattaaagcagagtaggctatcagcaacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctacttagctatctaaagttattaaactattaaagcagagtaggctatcagcaacagca 440

                                                                       
Query: 241 gctttttgattatgaaggctataatcactaagcaggtaataaagtgacatggaagaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctttttgattatgaaggctataatcactaagcaggtaataaagtgacatggaagaagta 500

                                                                       
Query: 301 ctttaatatggaagtagattaacaatttaagctggaaatacccacttagtatgtgtgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttaatatggaagtagattaacaatttaagctggaaatacccacttagtatgtgtgttt 560

                                                                       
Query: 361 tctagattatactctccgcagtcttatatttatcatgtgatacttggtctacattctctt 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctagattatactcgccgcagtcttatatttatcatgtgatacttggtctacattctctt 620

                                                      
Query: 421 gaaatttcacttgtttagattgtgatttatgtttcttttactg 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatttcacttgtttagattgtgatttatgtttcttttactg 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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