BAC Information

Click to search

BAC

Clone NameMSMg01-354P22
Chromosome16 (Build37)
Map Location 84,369,035 - 84,369,471
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572, EG621729, LOC640489
Downstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354P22.T7 (MSMg01no354_p22.b1)MSMg01-354P22.TJ (MSMg01no354_p22.g1)
ACCAG465489AG465490
length761761
length of high quality
(start - end)
498 (49 - 546)436 (79 - 514)
definitionCHROMAT_FILE: MSMg01no354_p22.b1 PHD_FILE: MSMg01no354_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:19 2005CHROMAT_FILE: MSMg01no354_p22.g1 PHD_FILE: MSMg01no354_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCTGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGATCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTT
GATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTCCTGGGTCTTCAATTTCATTCCTTG
GGTCTATTTGTCTTGCCTCTATTCCCGACCCCGTTTTTTTTATCCTCCCT
GCTTTTGTTTACTACTTTTTTTCCCTTCTTTTTTTTTTTCCCTCCATTTT
CTTTTTTTCCTTTCCCAAGTTTTTTTCCTTTCTATCTCCTTTCGCTCTCT
TTTATCTCCTG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGGACAAGGAAAACTTTTT
TTAAAAATGTATTTATATCTACCACAGACTGGTGCTTTAGTAAGCAAAGA
CTACAATGCACCTGTGGGCGGCATATATCAATTTATGCCATGCCTGTGAT
AGTTGGTGATTCTGAAAGAGAGGAGACAACTTAGAAATAAGCATATGGTT
GCTTAATTCTCCCTTAGCAGTTTCATTTAAACCAAGGCTGAAATGCTGAA
AAGAGTCTAAGATTCTTATAAGAAGTATAGAATTTTTTTTTTACGAGTAT
TGCAGTAATCATAGGATTAAGGAATAGTACAAAGATGACATCAGGCAACA
GACCTCATGTAGGAGATTTATTGCGGTGGGGATGGGAGGCAGGGGAAGGG
GACACAAATGGCTGCCTCTGAGTGAGGAAGAGAGAGAGATCTGGAGGGGG
GTAGAGAGAGGTAGGNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GNNTNNNNNNNNTNTTNNNNNTTTTTNTTTTTTTTTTTTTNNNTTTTTTT
TTTTTGTTTTTTGNNTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTGTTTG
TGNTTTTTTTTTTTTTTTTGGTNTGTTTGTTGTTTTTTTTTTTGTTTTTT
TTGTTTTTTTTTGTGGTGTTTTTTTTTTTTTNTTTGNTTTGTTTGGTGTT
TTTTGTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_p22.g1 MSMg01no354_p22.g1 CHROMAT_FILE:
MSMg01no354_p22.g1 PHD_FILE: MSMg01no354_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:19 2005
         (436 letters)



>mm_chr16_84368835_84369671
          Length = 837

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%), Gaps = 1/437 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaggacaaggaaaactttttttaaaaatgtatttatatctaccacagactggtgcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tagaggacaaggaaaactttttttaaaaatgtatttatatctaccacagactggtgcttt 578

                                                                       
Query: 61  agtaagcaaagactacaatgcacctgtgggcggcatatatcaatttatgccatgcctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agtaagcaaagactacaatgcacctgtgggcggcatatatcaatttatgccatgcctgtg 518

                                                                       
Query: 121 atagttggtgattctgaaagagaggagacaacttagaaataagcatatggttgcttaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atagttggtgattctgaaagagaggagacaacttagaaataagcatatggttgcttaatt 458

                                                                       
Query: 181 ctcccttagcagtttcatttaaaccaaggctgaaatgctgaaaagagtctaagattctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctcccttagcagtttcatttaaaccaaggctgaaatgctgaaaagagtctaagattctta 398

                                                                       
Query: 241 taagaagtatagaa-ttttttttttacgagtattgcagtaatcataggattaaggaatag 299
           |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 397 taagaagtatagaatttttttttttaggagtattgcagtaatcagaggattaaggaatag 338

                                                                       
Query: 300 tacaaagatgacatcaggcaacagacctcatgtaggagatttattgcggtggggatggga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tacaaagatgacatcaggcaacagacctcatgtaggagatttattgcggtggggatggga 278

                                                                       
Query: 360 ggcaggggaaggggacacaaatggctgcctctgagtgaggaagagagagagatctggagg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggcaggggaaggggacacaaatggctgcctctgagtgaggaagagagagagatctggagg 218

                            
Query: 420 ggggtagagagaggtag 436
           |||||||||||||||||
Sbjct: 217 ggggtagagagaggtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space:   353556
Effective search space used:   353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)