BAC Information

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BAC

Clone NameMSMg01-355A04
Chromosome16 (Build37)
Map Location 31,998,822 - 31,999,252
singlet/doubletsinglet
Overlap geneSenp5
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2
Downstream genePak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355A04.T7 (MSMg01no355_a04.b1)MSMg01-355A04.TJ (MSMg01no355_a04.g1)
ACCAG465501AG465502
length758778
length of high quality
(start - end)
573 (45 - 617)431 (75 - 505)
definitionCHROMAT_FILE: MSMg01no355_a04.b1 PHD_FILE: MSMg01no355_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:20 2005CHROMAT_FILE: MSMg01no355_a04.g1 PHD_FILE: MSMg01no355_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCATCTGTTTCAGAGCTACCAAGAGCTGGCTCCCCGAGCCCATCC
AGCGATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTT
CTTCTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTATTCC
TACCTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTA
TACTTATTTTGTGTACCATATTTCCTCTTTGTTCCTACTCTCTCTCCCCA
CTTTACTTCTGATAGCTTGTCCTGAATTTCCTCTAGAATTTTCAGCCCTA
TCTTAATCACTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACC
AGAAAAAATTCAAGACCAAACATATTCCACTTTACTTCTGATAGACTGTC
TTGAATTTCCTTAGAAAGTTCAAGACCAGACTTACCTCGTAAAGCTGTAC
TCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAATTCATACAGTTG
AATCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGC
AGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTT
TCTCGTCCCGGAATTCGGCACCTATTGTTATTAGACGCGTTCTCACGACC
GGTCAGGAAAGACGCAACAAACCTGAATCTTCTTGGGCCAAGCTTTATTG
CTTACTCG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAACTGATGTAATCATTTTGGAAGA
GAATTTGGGAAGATTTTATAAAAACCACAAAATTATCCTTAATCTGGCAG
TCCCACTTTAAGCCATTTAAACTGGAGACACAGCTGTGATAATAATGAAG
AGGCTATCTGTTGAAACATTGTTTATAGTAGCAAATAGTCAGTCAGTGCC
CACAGGCAAGAGCATGGCTGATAAACTACTTCTCTGTGTGATGAGTGAAG
CTTCACTGGAGCAAGGATTCTCTAGCTCCCAGCACGCAGCCATTTGTAGA
ATGCATCCTTAGAGGAAGAGAGCAAAGTTCACAGGTGGAAAGGTGGCAGA
AATGAGGAGGGAGGGACACTTCTCTGAATGTTGTTTTCCTACAGGTCTGG
CTTTAGGACCAAGCTAAATGAGCCTGGCCTGCTTGCTTTCTTTTCCTTTC
TGCAGTACTGGAGAATTAAACTGAGACTTCATGAATGCCCAGCAAGTGTT
CTACTGTTGAATCTCTCTTAGTCCCTGAATTTCCAATAACTTACACACTC
TTACTTTAAAAACCCAAATATTATCAACCTTTACAACATCCAACTTTTGA
CCTCCTGCCTCTAGACCTCTTCTAAAACCGACCTACTTACTGGTTTTTGT
TCATTGTTTTATCAATTTCCCCCTTTTTTCATTATACTTATCCTTCTTCT
TCTCCATACTTTGGTATTACTCTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_a04.g1 MSMg01no355_a04.g1 CHROMAT_FILE:
MSMg01no355_a04.g1 PHD_FILE: MSMg01no355_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:20 2005
         (431 letters)



>mm_chr16_31998622_31999452
          Length = 831

 Score =  818 bits (423), Expect = 0.0
 Identities = 429/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaactgatgtaatcattttggaagagaatttgggaagattttataaaaaccacaaaatt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 caaactgatgtaatcattttggaagagaatttgggaagactttataaaaaccacaaaatt 260

                                                                       
Query: 61  atccttaatctggcagtcccactttaagccatttaaactggagacacagctgtgataata 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 atccttaatctggcagtcccactttaagcaatttaaactggagacacagctgtgataata 320

                                                                       
Query: 121 atgaagaggctatctgttgaaacattgtttatagtagcaaatagtcagtcagtgcccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaagaggctatctgttgaaacattgtttatagtagcaaatagtcagtcagtgcccaca 380

                                                                       
Query: 181 ggcaagagcatggctgataaactacttctctgtgtgatgagtgaagcttcactggagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaagagcatggctgataaactacttctctgtgtgatgagtgaagcttcactggagcaa 440

                                                                       
Query: 241 ggattctctagctcccagcacgcagccatttgtagaatgcatccttagaggaagagagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggattctctagctcccagcacgcagccatttgtagaatgcatccttagaggaagagagca 500

                                                                       
Query: 301 aagttcacaggtggaaaggtggcagaaatgaggagggagggacacttctctgaatgttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttcacaggtggaaaggtggcagaaatgaggagggagggacacttctctgaatgttgt 560

                                                                       
Query: 361 tttcctacaggtctggctttaggaccaagctaaatgagcctggcctgcttgctttctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcctacaggtctggctttaggaccaagctaaatgagcctggcctgcttgctttctttt 620

                      
Query: 421 cctttctgcag 431
           |||||||||||
Sbjct: 621 cctttctgcag 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)