BAC Information

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BAC

Clone NameMSMg01-355L10
Chromosome16 (Build37)
Map Location 17,260,471 - 17,260,877
singlet/doubletsinglet
Overlap geneHic2
Upstream genePkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603
Downstream geneD16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355L10.T7 (MSMg01no355_l10.b1)MSMg01-355L10.TJ (MSMg01no355_l10.g1)
ACCAG466035AG466036
length756776
length of high quality
(start - end)		555 (45 - 599)407 (76 - 482)
definitionCHROMAT_FILE: MSMg01no355_l10.b1 PHD_FILE: MSMg01no355_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:14 2005CHROMAT_FILE: MSMg01no355_l10.g1 PHD_FILE: MSMg01no355_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTAATCTCGCAGTAGATAGAATGACCCATTCTGTGGACAAGGCTT
TTCCCCTAGCCATCCCTACTATTACCCAATGAGCCCACAAACAAAGTGGC
CATGTTGGCAGAGATGGAAGTTACGCATGGGCTCAACAACATGGACTTCC
ACTCACCAAGGCTGACCATGCTATAGCTGCTGCCGAGTGCCAGATCTGCC
AAAAGCAGAGACCAGTACTAAGTCCCAGATATGGCACCATTCCCTGGGGT
AACTAGTCCGTGAGCGGGTGGCAGGTTGACTACACTAGATCACTTCTTCT
ATGGAAAGCACAAGCCTTTGTCCTTACTGGAGTAGATACTTAAATTCTGG
TTATAGATTTCCCTTTCCTGACAAAACCACGATCCATGAACTTATAGAAT
GACTAATACAATCATCGTATTCCACAGAGTATTGCTTCTAACCAAAGAAC
TTACTTCACAGCCCAAGAATTGCAACAGTGGGCCTATAAACATGAAATCC
ACTGGTCTTACCATGAAGCCTGCTGGTCTGACATGGAGATGGAAGAGCCT
TTTGAAGACAGTTACAGTACAGATTAGATTAGGTAGCAGCAGCTTACCCA
TGGGTTCCAGAACCAAGGGGTGAAAGAGGAGATGGTCCCACTCACTATCA
CCCCCTAGGAAATTTTTTGCTTCCGGTTCTGGCAACTTTAACTTCTGCTG
TCTTAG

GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATACCCAGTACAGTTGAGGCTGAG
CCACTTGCTTTTGTTTTTCTGTAGTGGGAGTAACCTGGGCTTGGGCTGGC
CCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCTGCTCA
GGGCATGCTGTGTGTGGGGCAGGTGCTGGGCATCTGAGTAACAGGCAGAA
GCCATTAGGAAGGAGCAGCTCCCTTTTATGAGCCAGGGTCAGGTGGAAGT
GAGCCCACCCCATCCTGTCCCCTCCAGAGCTCAGGTATGTCTGGTAACCT
ACAGCAGAGCCAGAGGTAATGGTTGACCCCTACCTATACTGACTCAGTAC
AGGGTCAAGCTAACCCTTCCATGGGTGTGTCAGCCAGCCTCAGATGTTTG
CATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGT
CCCAGATGGGCCTATAAACCTTATCATGTTGCTTCATGGATTTTTATTTT
CCTTTTGATTTTTTACTTCCCAACAATCAATCCCCGAGTCCTCCCCTGTT
TGCCTCCCTCCCCTAAAGACTCTGGAGCCTACCTTTTTCACCCCAATATT
TCCATCTCGCTTTTCTACTTCCCCTTTCCCCTCCCTCCTTTCTTGCCCTT
CTCTCTTCTCTTTACTTTCCTATCCATTATTCGCCTCTCTTATCCCTTCC
TTTCTTCCCCACTTCCTCTCCTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_l10.g1 MSMg01no355_l10.g1 CHROMAT_FILE:
MSMg01no355_l10.g1 PHD_FILE: MSMg01no355_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:14 2005
         (407 letters)



>mm_chr16_17260271_17261077
          Length = 807

 Score =  787 bits (407), Expect = 0.0
 Identities = 407/407 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacccagtacagttgaggctgagccacttgcttttgtttttctgtagtgggagtaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatacccagtacagttgaggctgagccacttgcttttgtttttctgtagtgggagtaacc 260

                                                                       
Query: 61  tgggcttgggctggcccaagccccttgtgggacccagtgttctctgaagagatgtctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggcttgggctggcccaagccccttgtgggacccagtgttctctgaagagatgtctgct 320

                                                                       
Query: 121 gctcagggcatgctgtgtgtggggcaggtgctgggcatctgagtaacaggcagaagccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcagggcatgctgtgtgtggggcaggtgctgggcatctgagtaacaggcagaagccat 380

                                                                       
Query: 181 taggaaggagcagctcccttttatgagccagggtcaggtggaagtgagcccaccccatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaaggagcagctcccttttatgagccagggtcaggtggaagtgagcccaccccatcc 440

                                                                       
Query: 241 tgtcccctccagagctcaggtatgtctggtaacctacagcagagccagaggtaatggttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcccctccagagctcaggtatgtctggtaacctacagcagagccagaggtaatggttg 500

                                                                       
Query: 301 acccctacctatactgactcagtacagggtcaagctaacccttccatgggtgtgtcagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccctacctatactgactcagtacagggtcaagctaacccttccatgggtgtgtcagcc 560

                                                          
Query: 361 agcctcagatgtttgcatgggcttctgcaaggggcaaggcaagacca 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcctcagatgtttgcatgggcttctgcaaggggcaaggcaagacca 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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