BAC Information

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BAC

Clone NameMSMg01-355P21
Chromosome16 (Build37)
Map Location 59,595,960 - 59,762,210
singlet/doubletdoublet
Overlap geneLOC672884, Arl6, Epha6
Upstream geneGm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355P21.T7 (MSMg01no355_p21.b1)MSMg01-355P21.TJ (MSMg01no355_p21.g1)
ACCAG466244AG466245
length746757
length of high quality
(start - end)		574 (49 - 622)482 (79 - 560)
definitionCHROMAT_FILE: MSMg01no355_p21.b1 PHD_FILE: MSMg01no355_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:35 2005CHROMAT_FILE: MSMg01no355_p21.g1 PHD_FILE: MSMg01no355_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,761,641 - 59,762,210)(59,595,960 - 59,596,441)
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCCTTTCATTTTCAAACTCCTCTCTGTCTGTCACCTTGAA
ACCCTTGCAGAACAGGACAGTAGCCATGAGAGTTTTGGCAGGTTTAGAAA
TGCAAAGAATCATCACTTGAGATATTGATAGATACAAATCATATAAGTCT
ATGTATTTAATCATTTTGGTTTGTTGAGTTTGTAAATTTTCCCACAGTGC
ATATTTTACTTGTATTCTAAAAGAATAAAAATACTATACATCTCAAACAT
AGAGAAACAGCTCCTGATAGAGTTGCAAAACAATTTCTTCTGCTAGGTAT
CAGACAGTGACTAAGCAATGTGTTAATGGGGCTTCTCTACTGACAAAGCT
GGCTGGAGATCGTTTTTGCTGGATCACGTTTTCTTTTGACTGAAAGACAA
GACGATAAAGGAAATGAACATTCCTATCTCACTGATTTTTCACAGTATTC
TGGAACATAATCCCAAGAAGTGCCAGGTTCCTTCAGAGATTTACATTTAA
CATCTGGTCTTCATTGTCACCACTAGAATTACCATCACACTATTAACTTT
TATAGGCTGATAGCCCTGAGTCCAAGATGCCATCTGAAAAGAGGATGACT
GAGTCTTGAATTTCAAACATTACAAAACTTTATCAGTAATCTTGTTAGCT
AGGAGGTACCCTTGCCCCTGGCGGACTCTGTTCCTCAGTTGGGCAT

NACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAATGAGCAACCCCACGGGC
ATCCCATGAAAACCCAAGAAACAAACAAAATAAATAGACCTCACTTACAG
AAGGTAGCGTGTCTTGAAACTCTCCGACAAACTTACCATTCTCTCTGCTG
CCAAGTGTACGTTCCATGATCCGAGCTAGCCTGGCAGACCAGTACGGTAC
ACACCTCTGAGAGCTTCTAGAATTTGGTAGGCATTTTTTTGACTTCAAGT
ATGAATTGCTGGCATGGCATAAGCATAGCCTTATTCTTTTCAGCTTAGCC
AAAAGCCAATAGCTCTCAGGCTAGACATCAGAACCATTGCTTTTATTTAT
TTATTTATTTATTTTTATTTTTTATTTTTGGCAATCCTATCTTCTGCTCT
ACAGCCTATTAGCTTCCTGACCTCTGTCATTCCACGCTCTCAGCTGTGAT
GACAGGTCACACACCGCCCAACCTACATCTCACAAAGCCCACTTGGAGAG
TAGGGAAAGTACTATCCTCGGCTGAAAACCACTAATCACCTCTTTAATGC
TCCACCCCACAAGCACAGATCCACTCCTTTATCCCTGTTTGGGAAAAAAT
ATGGCAACATGGGACACACTCCTGAACTTAAATTTAAGGAACCTGTCATA
CCCCCTCTCCAATGGGTGAAACCATAGGTTCCCTGCCCCCCCCTGGAACA
AAAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_p21.b1 MSMg01no355_p21.b1 CHROMAT_FILE:
MSMg01no355_p21.b1 PHD_FILE: MSMg01no355_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:35 2005
         (574 letters)



>mm_chr16_59761437_59762410
          Length = 974

 Score = 1102 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcctttcattttcaaactcctctctgtctgtcaccttgaaacccttgcagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaattctttcctttcattttcaaactcctctctgtctgtcaccttgaaacccttgcagaa 715

                                                                       
Query: 65  caggacagtagccatgagagttttggcaggtttagaaatgcaaagaatcatcacttgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 caggacagtagccatgagagttttggcaggtttagaaatgcaaagaatcatcacttgaga 655

                                                                       
Query: 125 tattgatagatacaaatcatataagtctatgtatttaatcattttggtttgttgagtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tattgatagatacaaatcatataagtctatgtatttaatcattttggtttgttgagtttg 595

                                                                       
Query: 185 taaattttcccacagtgcatattttacttgtattctaaaagaataaaaatactatacatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 taaattttcccacagtgcatattttacttgtattctaaaagaataaaaatactatacatc 535

                                                                       
Query: 245 tcaaacatagagaaacagctcctgatagagttgcaaaacaatttcttctgctaggtatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcaaacatagagaaacagctcctgatagagttgcaaaacaatttcttctgctaggtatca 475

                                                                       
Query: 305 gacagtgactaagcaatgtgttaatggggcttctctactgacaaagctggctggagatcg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gacagtgactaagcaatgtgttaatggggcttctctactgacaaagctggctggagatcg 415

                                                                       
Query: 365 tttttgctggatcacgttttcttttgactgaaagacaagacgataaaggaaatgaacatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tttttgctggatcacgttttcttttgactgaaagacaagacgataaaggaaatgaacatt 355

                                                                       
Query: 425 cctatctcactgatttttcacagtattctggaacataatcccaagaagtgccaggttcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cctatctcactgatttttcacagtattctggaacataatcccaagaagtgccaggttcct 295

                                                                       
Query: 485 tcagagatttacatttaacatctggtcttcattgtcaccactagaattaccatcacacta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tcagagatttacatttaacatctggtcttcattgtcaccactagaattaccatcacacta 235

                                         
Query: 545 ttaacttttataggctgatagccctgagtc 574
           ||||||||||||||||||||||||||||||
Sbjct: 234 ttaacttttataggctgatagccctgagtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_p21.g1 MSMg01no355_p21.g1 CHROMAT_FILE:
MSMg01no355_p21.g1 PHD_FILE: MSMg01no355_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:35 2005
         (482 letters)



>mm_chr16_59595760_59596641
          Length = 882

 Score =  893 bits (462), Expect = 0.0
 Identities = 477/482 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaatgagcaaccccacgggcatcccatgaaaacccaagaaacaaacaaaataaataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaatgagcaaccccacgggcatcccatgaaaacccaagaaacaaacaaaataaataga 260

                                                                       
Query: 61  cctcacttacagaaggtagcgtgtcttgaaactctccgacaaacttaccattctctctgc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 cctcacttacagaaggtagcgtgtcttgaaactctctgacaaacttaccattctctctgc 320

                                                                       
Query: 121 tgccaagtgtacgttccatgatccgagctagcctggcagaccagtacggtacacacctct 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccaagtgtaagttccatgatccgagctagcctggcagaccagtacggtacacacctct 380

                                                                       
Query: 181 gagagcttctagaatttggtaggcatttttttgacttcaagtatgaattgctggcatggc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gagagcttctagaatttggtaggcatttttatgacttcaagtatgaattgctggcatggc 440

                                                                       
Query: 241 ataagcatagccttattcttttcagcttagccaaaagccaatagctctcaggctagacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagcatagccttattcttttcagcttagccaaaagccaatagctctcaggctagacat 500

                                                                       
Query: 301 cagaaccattgcttttatttatttatttatttatttttattttttatttttggcaatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaaccattgcttttatttatttatttatttatttttattttttatttttggcaatcct 560

                                                                       
Query: 361 atcttctgctctacagcctattagcttcctgacctctgtcattccacgctctcagctgtg 420
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcttcttctctacagcccattagcttcctgacctctgtcattccacgctctcagctgtg 620

                                                                       
Query: 421 atgacaggtcacacaccgcccaacctacatctcacaaagcccacttggagagtagggaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgacaggtcacacaccgcccaacctacatctcacaaagcccacttggagagtagggaaa 680

             
Query: 481 gt 482
           ||
Sbjct: 681 gt 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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