BAC Information

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BAC

Clone NameMSMg01-356C14
Chromosome16 (Build37)
Map Location 68,071,502 - 68,071,861
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm2, 9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356C14.T7 (MSMg01no356_c14.b1)MSMg01-356C14.TJ (MSMg01no356_c14.g1)
ACCAG466372AG466373
length758762
length of high quality
(start - end)		603 (36 - 638)461 (68 - 528)
definitionCHROMAT_FILE: MSMg01no356_c14.b1 PHD_FILE: MSMg01no356_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:48 2005CHROMAT_FILE: MSMg01no356_c14.g1 PHD_FILE: MSMg01no356_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTC
ACATTGCGAGATCTGATTTTTTTCTATAAGAATTTCTTCCAGTTAGTAGA
TAGAATTATCACTCCAAGTAACATTTTTTGAACTGCTTACAAGCTTTTAA
AAGAATACCTTATAGATTTTGTTTATAGTAGGTATGAGAAAAGTTATATT
AACTGTTAAATAAATGATAACCAAAATACAATTTATAGATGCAGAGAGGT
TAGCCATAGAAGAGACTAAGGCCTTACACATGGGTATCTCTTGAAGTGGA
AATAAAATTGATTTTGCATGAGGACTGGACCAGGTGGTGGGAAATGATAT
CGGGAGGCTTAGGTGAAAGGAGATGAGATTGAGATAGGGAACATGGAGAA
AGAAAGACTTGAAGGGCATTTGAGAGGCAGTATGGAAACTTAGAGCAGTG
GAATCATTCTAATATATATTAAGGTGATCATAAAGAAGGAAGTCTCCAAA
CAAAGAGGGAAACTGAACCCCTACTAGTCATCTCTTGTCTCTAATGGAAG
CTTCCAATTACAGAACTTGGTTCCATCCAATTGAGTCCTTGGCAGAAAGA
AGCCTATGGAAATCCTGAAACAACAGAGGCTGACATCAAAGCAACCAGTT
ATTCTCTACTATTGACAGAATGGCCCCATTTCTATGGACGTTAACCACAT
AACATATCAAATACAGAGAGGTCCAGTGGATAACTATGTAGAAACTTCAC
CCCCATAT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGGT
GTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGG
TTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCG
TATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGAT
GGATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATTTTATTG
AGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTAT
CTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCAT
AAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTG
TGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACT
AAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTG
CTTCTATTTCTTTAGGGGATATGGGACTGCTTATCAAGTCAACTTGATCC
TGATTTCACTTTTGGACCTGTGACTGCCCAGAAATTTGCTCCATTCTTCC
CAGTTTTCTATTTTTGTCGATAATATTCCCCCGTATTAAGACCTTCACGT
CGTCCTTTTATCCCCCCTTCTACTTCAATTTATCCCTTCCCTCCTTTCCA
TTCCCTATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_c14.b1 MSMg01no356_c14.b1 CHROMAT_FILE:
MSMg01no356_c14.b1 PHD_FILE: MSMg01no356_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:48 2005
         (603 letters)



>mm_chr16_68071502_68072504
          Length = 1003

 Score =  621 bits (321), Expect = 0.0
 Identities = 351/361 (97%), Gaps = 2/361 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattcacattgcgagatctgatttttttctataagaatttcttccagttagtag 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaattctattcacaaagggagatctgatttttttctataagaatttcttccagttagtag 301

                                                                       
Query: 65  atagaattatcactccaag-taacattttttgaactgcttacaagcttttaaaagaatac 123
           |||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||
Sbjct: 300 atagaattatcactcc-agataacattttttgaagtgcttacaagcttttaaaggaatac 242

                                                                       
Query: 124 cttatagattttgtttatagtaggtatgagaaaagttatattaactgttaaataaatgat 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 241 cttatagattttgtttatagtaggtatgagaaaagttatattaactattaaataaatgat 182

                                                                       
Query: 184 aaccaaaatacaatttatagatgcagagaggttagccatagaagagactaaggccttaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaccaaaatacaatttatagatgcagagaggttagccatagaagagactaaggccttaca 122

                                                                       
Query: 244 catgggtatctcttgaagtggaaataaaattgattttgcatgaggactggaccaggtggt 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 121 catgggtatctcttgaagtggaaataaaattgattttgcaggaggactggaccaggtggt 62

                                                                       
Query: 304 gggaaatgatatcgggaggcttaggtgaaaggagatgagattgagatagggaacatggag 363
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggaaatgatatctggaggcttaggtgaaaggagatgagattgagatagggaacatggag 2

            
Query: 364 a 364
           |
Sbjct: 1   a 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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