BAC Information

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BAC

Clone NameMSMg01-356J08
Chromosome16 (Build37)
Map Location 81,775,073 - 81,775,468
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039724, Ncam2
Downstream geneLOC621470, LOC435484, Pgk1-ps1, EG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356J08.T7 (MSMg01no356_j08.b1)MSMg01-356J08.TJ (MSMg01no356_j08.g1)
ACCAG466690AG466691
length751909
length of high quality
(start - end)		534 (39 - 572)91 (78 - 168)
definitionCHROMAT_FILE: MSMg01no356_j08.b1 PHD_FILE: MSMg01no356_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:21 2005CHROMAT_FILE: MSMg01no356_j08.g1 PHD_FILE: MSMg01no356_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GGAAAACATTTCTTCCACCACAGCATGACTGATGTACATATGAATTAATA
GTGGCCAGTGCAACATGCATATGACCTGCACAGGTTCAGTATAGACAGGG
CCCCAACAATAAGAGTAGGAAGCAGACACAGGGTTCCACTCCTAACCAAC
AGACTATTTATATTCGACAGCATTGTAAGGAGAAAATCATTTTTGTCCAG
TGGAATACCACTAGAAATCTTACCTGTACCCCAGGGATTTCTCCTTCACT
GGATTACATGATCAACACAAAACCAACTCCGTATTTGTAGTGGTGTTTTG
TTTGTTTATTTGCTTTTTGGTCATTTTGGCTTGATTTGATTTTTTTAAGA
CTTATACTTGAAAGCACTTAAATCTTATCAAAAAATAATTGCCTATATTA
GCCTGAATATATTTTAAATAGAAAATCAAAACTGAAGGGATACACAGCCA
AGCTGCACACATCAGCACTGTCCTTGCTACAAAACATACAAAAAGGAGAC
ACATGCACAGAGTTATTTTATAGCTAGTTAATCAATGCAAGCTTGTCTGA
TGCCCCCTGGCCAGTTAACAATGTAATCTCATGCTTCCAATACATTATGA
TTTCCAGATTATCCCTATAGTCATTTTCGTCCTGATACCTATTTTATATA
TATGAGCTGTAAAAGGAATTTTACTTTCCCGCATAATGACGCTCCCCTGC
C

ACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAATTTTTATC
ATGAATGTGTGTTGGATATTGTCGAATGCTTTTTCCGAATCTAACTAGAT
GATCATGTGGTTTTTGCCTTTGAGTTTGTTTATATAACATATTACCTTGT
TCCATTTTCCTATTTTACTCTTCCCTCGTCTCTCTGTAATATTACCTACC
TGTTCTTTACGGACTTTCGCTTTACCTGCTTTTTTTCCCTCCTCCTATTT
TTCTTTTTTTCTCTCCTCCCCCCTTCTTCTTTTCTTTTCCCCCTTTTTTC
TTTCCATTTTCCTTATCTCCTTTCCTCTTTTTTCTCTCCTTTTCTCCTTT
TTTTCTTCTTTTTTCTCCTTTCTCCCCTTTTCCCCCCTTCCATTTTTCCT
CCTTTTCCCCTCCTTTTTTTTACTTCCTTTTCTTTTATTTCTCTCCCTTT
CTTTCTATCTTTTTCCCCCTCTTTTTACTACTCCTTCCTTTCCCCCTCTA
TATTTTTCCTTTTATTCTTCCCTAGTCTTTCTTCTTACTTCCTCTTCTCC
CTTCTTCCCCTTTCCCCCCTTCCATTAATCCTCTCCTTTTATATTTATCC
ACTTACATCTTTTTGTTTTTATTCACCCTCTCCCCTTTTTTTCTTTTCCC
CTTTCTCCATTCCCTTCCTTTTGTTCATTTCCTTTGTTTTCACCACCTCA
CTTCTCCTCTTATTATTTTTTACTCCCCCTTTTACCTCCCTTTACCTTAT
TTTCTCTTTTATTTATTCCCCCTTTACCTTTTGTTCACATTTACCCATTT
TCTTCCTCATGCACACTTCCTCTTTTTTTTATCCCCTCTTTTTCTCCTTC
TTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_j08.b1 MSMg01no356_j08.b1 CHROMAT_FILE:
MSMg01no356_j08.b1 PHD_FILE: MSMg01no356_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:21 2005
         (534 letters)



>mm_chr16_81774534_81775468
          Length = 935

 Score =  719 bits (372), Expect = 0.0
 Identities = 390/396 (98%), Gaps = 1/396 (0%)
 Strand = Plus / Minus

                                                                       
Query: 140 acagggttccactcctaaccaacagactatttatattcgacagcattgtaaggagaaaat 199
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 935 acagggttccacttctaaccaacagactatttacattcgacagcattgtaaggagaaaat 876

                                                                       
Query: 200 catttttgtccagtggaataccactagaaatcttacctgtaccccagggatttctccttc 259
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 875 catttttgtccagtggaataccactagaaatcttacctgtatcccagggatttctccttc 816

                                                                       
Query: 260 actggattacatgatcaacacaaaaccaactccgtatttgtagtggtgttttgtttgttt 319
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 actggattacatggtcaacacaaaaccaactccgtatttgtagtggtgttttgtttgttt 756

                                                                       
Query: 320 atttgctttttggtcattttggcttgatttga-tttttttaagacttatacttgaaagca 378
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 755 atttgctttttggtcattttggcttgatttgattttttttaagacttattcttgaaagca 696

                                                                       
Query: 379 cttaaatcttatcaaaaaataattgcctatattagcctgaatatattttaaatagaaaat 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cttaaatcttatcaaaaaataattgcctatattagcctgaatatattttaaatagaaaat 636

                                                                       
Query: 439 caaaactgaagggatacacagccaagctgcacacatcagcactgtccttgctacaaaaca 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 caaaactgaagggatacacagccaagctgcacacatcagcactgtccttgctacaaaaca 576

                                               
Query: 499 tacaaaaaggagacacatgcacagagttattttata 534
           ||||||||||||||||||||||||||||||||||||
Sbjct: 575 tacaaaaaggagacacatgcacagagttattttata 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space:   484700
Effective search space used:   484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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