BAC Information

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BAC

Clone NameMSMg01-356O02
Chromosome16 (Build37)
Map Location 60,167,260 - 60,167,602
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneOlfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356O02.T7 (MSMg01no356_o02.b1)MSMg01-356O02.TJ (MSMg01no356_o02.g1)
ACCAG466917AG466918
length753760
length of high quality
(start - end)
380 (41 - 420)343 (72 - 414)
definitionCHROMAT_FILE: MSMg01no356_o02.b1 PHD_FILE: MSMg01no356_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:44 2005CHROMAT_FILE: MSMg01no356_o02.g1 PHD_FILE: MSMg01no356_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTTATGCTCTGTGTCCCATTTTTTAATGAGGTTATTTATTTTTCTA
GAGTCCATCTTCTCGAGTTCTTTATATATGTTGGGTATTAGTCCCCTATC
TGATTTAGGATTGGTAAGGATCCTTTCCCAATCTGTTGGTGGCCTTTTTG
TCTTATTGACAATGGCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGG
TCCCATTTGTCGATTCTTGATCTTACAGGACAAGCCATTGCTGTTCTATT
CAGGAATTTTTTTCCCCTATGCCCATATCTTTGAGGCTTTTCCTCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCC
ACTTAGACTCGACCTTATTACAAGGAGATAAGAATGGATCAATTTGTGTT
CTTCTACATGACTTCCACCATTTGTGCCAGCACCCTTTGTTGGAAATGTT
GTCCTTTTTCCTCCGTATGGTTTTAGTTTCCTCGCCACTGATCATTTGAC
TATATGCTTGTGGCTTCATCTTTTTTCCTCCCTTTCTTTTTTTTTTGGTC
TTGTAGTCCGTTTTTTTACACGTACTCTGTTTCCTTTTTTCTCTCTCCGA
TCTGAAATCTCTTCTTCTCTCTCTTCTTTCTCCTTTGCGTCCCCCATCCC
CCGCTTTGCTCTCCCTTTTCCTCTCCTTTCCCCCTTTTCTTTTCTACTTT
TTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGCAGTGCATGCTTTCCTTGCACTAGA
GTGGTGTATTTAGCATTTGCATGAGTCAGCTGGCAGCTCCATCCAATTAG
CTACCAGTCCTGGATCCTTTCTTCAGTTGGTGTTCGACTTAAAGACTCAA
ATATCTGATGGTTCTCTTTTCCTTTATGTACCCGTCTGAGGGGGAAAAAA
AATCATCAAAAGCACTGATGATGGTGTTAGCAAGCACTGAAAGATAGAAA
GTTCATAAAGCCAGAGCAGGTATCAATACCAGTGAGGCACAATTGGTTCC
CTTATTACCAGTCCAAGTAATTAAGGTGATCAAGCGACCAGATCCAAATG
TGTCTTATTCTTTGCCATATGTCTCCATTAGTATGGGATCTGTGTCTGTC
TGTGTGTGTGTGCGTGTGTGCGCGTTTGTGTTTTCTTCCTTTTCCCCTTT
TCCCCTTCTTTTTTTGCTTCCAACTTCCCTCTTCCCTCTTTCTCCTTTTC
TTTTTTCTCTATCCCTTTCTCTATATCCTATTTTCCCTATTCATATTCTT
TCCTCCTCCCTTCTTTTTTTCCTCCTTCTTTTTTCTCTTTTCTTCTTTTA
CTCTCTTTCCTTTTTTCTTCCTTTTTCTTTATCTCTCTCCACTTCCTTTT
TTTCCCCCCTTCCTTCTCCCATTATTTCCTATCCCCTTAATACCGACCCC
ATTCTACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_o02.g1 MSMg01no356_o02.g1 CHROMAT_FILE:
MSMg01no356_o02.g1 PHD_FILE: MSMg01no356_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:44 2005
         (343 letters)



>mm_chr16_60166948_60167690
          Length = 743

 Score =  642 bits (332), Expect = 0.0
 Identities = 341/344 (99%), Gaps = 2/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcagtgcatgctttccttgcactagagtggtgtatttagcatttgcatgagtcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 actgcagtgcatgctttccttgcactagagtggtgtatttagcatttgcatgagtcagct 596

                                                                       
Query: 61  ggcagctccatccaattagctaccagtcctggatcctttcttcagttggtgttcgactt- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 595 ggcagctccatccaattagctaccagtcctggatcctttcttcagttggtgttcgactta 536

                                                                       
Query: 120 aaagactcaaatatctgatggttctcttttcctttatgtacccgtctgagggggaaaaaa 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 535 aaagactcaaatatctgatggttctcttttcctttatgtacccgtctgaggggg-aaaaa 477

                                                                       
Query: 180 aatcatcaaaagcactgatgatggtgttagcaagcactgaaagatagaaagttcataaag 239
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aatcatcaaaagcattgatgatggtgttagcaagcactgaaagatagaaagttcataaag 417

                                                                       
Query: 240 ccagagcaggtatcaataccagtgaggcacaattggttcccttattaccagtccaagtaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ccagagcaggtatcaataccagtgaggcacaattggttcccttattaccagtccaagtaa 357

                                                       
Query: 300 ttaaggtgatcaagcgaccagatccaaatgtgtcttattctttg 343
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttaaggtgatcaagcgaccagatccaaatgtgtcttattctttg 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)