BAC Information

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BAC

Clone NameMSMg01-357H11
Chromosome16 (Build37)
Map Location 43,543,689 - 43,695,318
singlet/doubletdoublet
Overlap geneZbtb20, LOC100043314
Upstream geneBC002163, LOC667484
Downstream geneDrd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357H11.T7 (MSMg01no357_h11.b1)MSMg01-357H11.TJ (MSMg01no357_h11.g1)
ACCAG467360AG467361
length753778
length of high quality
(start - end)		594 (41 - 634)497 (72 - 568)
definitionCHROMAT_FILE: MSMg01no357_h11.b1 PHD_FILE: MSMg01no357_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:28 2005CHROMAT_FILE: MSMg01no357_h11.g1 PHD_FILE: MSMg01no357_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,543,689 - 43,544,278)(43,694,822 - 43,695,318)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTGCACTCCGCACATGTGGTTCATATAGAGCTCTAGAGGCAGGGCCCAA
AGCTCCTGGTCATAGTGTGTGCTGGGTTCCAGCCCTCAGCATGCCTGTTT
ATCACGTTCTCAGGGATGCTGCAGGTATGCAGTCAGCTCTGATGTTTTCC
CTGCACTATCTTTCTTCTTTGATGCTGATCAATTAAGCAGTGGCATGGCT
TTTCTGAGTTTAGTAATGACACGTCCCCAGGCCATTTCTGGAGTCCTGTC
ATCACATTGGTGTCGAATGAATGTAAGCCCTTATATGGACACGTTCTTAA
CAAATAAAAGCATTTCTCAAAGATAGATTCTCTTTTCTTAATGATATCAA
AGTCTATTAACTTTCTCATCCATTGGCCACTGGTAGACACTCTCTGAGAG
GTGTGCTTCTGAGGGAATATTTATGTGAATTTTAAGTTGCTCCACAGAGT
TCTGAGAACCTACTGCATGTGTGGATAAATCCTGAAGGAAAAGGAAGGAA
GAGCAGGAATATACATGAGGAAGAGGCCCTGGAAAAGGGTTTGAAAGACT
TTGTTATAAACTGGACCTTTACTACTAATTACTTGTAAGCATATATAATA
ATATATAATAATTCTGAATATTTCCAGGTGACGGTGGGACACGCCCTTAA
TCCTTAAACACTGGCAGAAGCAGGTTGATCTCTGAGTTCAAGGTATCCTG
GTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAAGGAAACGAATCGTCTACGTTGAGCT
CTCATTGTTTTTAAGCGTGAGTTGCTCTTTATATGTGTTGGCTCATCATT
TTAAAGCTATCCCATTTATTAACTGTGACCAAGGAGCTCTGGAGCTTTGG
TTTTAGTTAATTCTTTAGGGCATAGAAAGACAAAAGTTGAAGAAAATCCT
TCAAAATTCATGCTTTATGATAGATAGAGAAACCATTTTTATTCTAAGCC
ATAGCTTTATGAAAATATTTAAAACTTTTATTACAGAAGTAATACATATA
TGCTACATATTTCAACAACAAGCAATGTGAACTGTATAGAGTATGTATAG
ACGTTCCCTAGACTCTGGTCCTTTCCACCCTCCATGGATAGCCTGTGGAC
TTGCTTTCAAATGTGGGAAATCCTCTCAAACAAACAAATCCCTTATTCTT
ATTTTACCTAACACTATGTCTGGGAGATATTTTAATAGCTGTATATATAG
AATCAGTGTACTGTACAGTATTTTATAGAATAGGATTTCATATCCTTGAA
ACATACTTTTACTGATGAACACTTAAGCAATTTTCAGCGCCTTATTTGTA
AGCCCAAAACTTGAACCTTTTTTTTTTTAAACAGCTTTTGGTTGCGCTCT
GAAAATATTTCTCCTCCGATAGAATTCCAAAAATTTAATTAACTTGTCCA
AAGAGGGATAAATTTTATATTTTTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_h11.b1 MSMg01no357_h11.b1 CHROMAT_FILE:
MSMg01no357_h11.b1 PHD_FILE: MSMg01no357_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:28 2005
         (594 letters)



>mm_chr16_43543485_43544478
          Length = 994

 Score = 1087 bits (562), Expect = 0.0
 Identities = 583/590 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgcactccgcacatgtggttcatatagagctctagaggcagggcccaaagct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattccttgcactctgcacatgtggttcatatagagctctagaggcagagcccaaagct 264

                                                                       
Query: 65  cctggtcatagtgtgtgctgggttccagccctcagcatgcctgtttatcacgttctcagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctggtcatagtgtgtgctgggttccagccctcagcatgcctgtttatcacgttctcagg 324

                                                                       
Query: 125 gatgctgcaggtatgcagtcagctctgatgttttccctgcactatctttcttctttgatg 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgctgcagggatgcagtcagctctgatgttttccctgcactatctttcttctttgatg 384

                                                                       
Query: 185 ctgatcaattaagcagtggcatggcttttctgagtttagtaatgacacgtccccaggcca 244
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 ctgatcagttaagcagtggcatggcttttctgagtttagtaatgacacgtccccagacca 444

                                                                       
Query: 245 tttctggagtcctgtcatcacattggtgtcgaatgaatgtaagcccttatatggacacgt 304
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tttctgcagtcctgtcatcacattggtgtcgaaggaatgtaagcccttatatggacacgt 504

                                                                       
Query: 305 tcttaacaaataaaagcatttctcaaagatagattctcttttcttaatgatatcaaagtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttaacaaataaaagcatttctcaaagatagattctcttttcttaatgatatcaaagtc 564

                                                                       
Query: 365 tattaactttctcatccattggccactggtagacactctctgagaggtgtgcttctgagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattaactttctcatccattggccactggtagacactctctgagaggtgtgcttctgagg 624

                                                                       
Query: 425 gaatatttatgtgaattttaagttgctccacagagttctgagaacctactgcatgtgtgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaatatttatgtgaattttaagttgctccacagagttctgagaacctactgcatgtgtgg 684

                                                                       
Query: 485 ataaatcctgaaggaaaaggaaggaagagcaggaatatacatgaggaagaggccctggaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataaatcctgaaggaaaaggaaggaagagcaggaatatacatgaggaagaggccctggaa 744

                                                             
Query: 545 aagggtttgaaagactttgttataaactggacctttactactaattactt 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagggtttgaaagactttgttataaactggacctttactactaattactt 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_h11.g1 MSMg01no357_h11.g1 CHROMAT_FILE:
MSMg01no357_h11.g1 PHD_FILE: MSMg01no357_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:28 2005
         (497 letters)



>mm_chr16_43694622_43695518
          Length = 897

 Score =  922 bits (477), Expect = 0.0
 Identities = 492/497 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaggaaacgaatcgtctacgttgagctctcattgtttttaagcgtgagttgctcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aaaaggaaacgaatcgtctacgttgagctctcattgtttttaagcgtgagttgctcttta 638

                                                                       
Query: 61  tatgtgttggctcatcattttaaagctatcccatttattaactgtgaccaaggagctctg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tatgtgtcggctcatcattttaaagctatcccatttattaactgtgaccaaggagctctg 578

                                                                       
Query: 121 gagctttggttttagttaattctttagggcatagaaagacaaaagttgaagaaaatcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 577 gagctttggttttagttaattctttagggcatagaaagacaaaagttgaagaaaaccctt 518

                                                                       
Query: 181 caaaattcatgctttatgatagatagagaaaccatttttattctaagccatagctttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caaaattcatgctttatgatagatagagaaaccatttttattctaagccatagctttatg 458

                                                                       
Query: 241 aaaatatttaaaacttttattacagaagtaatacatatatgctacatatttcaacaacaa 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 457 aaaatatttaaaacttttattacagaagtaatacatatatggtacatatttcaacaacaa 398

                                                                       
Query: 301 gcaatgtgaactgtatagagtatgtatagacgttccctagactctggtcctttccaccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcaatgtgaactgtatagagtatgtatagacgttccctagactctggtcctttccaccct 338

                                                                       
Query: 361 ccatggatagcctgtggacttgctttcaaatgtgggaaatcctctcaaacaaacaaatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccatggatagcctgtggacttgctttcaaatgtgggaaatcctctcaaacaaacaaatcc 278

                                                                       
Query: 421 cttattcttattttacctaacactatgtctgggagatattttaatagctgtatatataga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 277 cttattcttattttacctaacactatgtctgggagatattttaatagctgtgtatataga 218

                            
Query: 481 atcagtgtactgtacag 497
           ||||||||| |||||||
Sbjct: 217 atcagtgtattgtacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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