Query= MSMg01no357_h16.b1 MSMg01no357_h16.b1 CHROMAT_FILE:
MSMg01no357_h16.b1 PHD_FILE: MSMg01no357_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:29 2005
(442 letters)
>mm_chr16_11273217_11274055
Length = 839
Score = 702 bits (363), Expect = 0.0
Identities = 417/455 (91%), Gaps = 35/455 (7%)
Strand = Plus / Plus
Query: 5 gaattcagagtgttatgaattaaaaaaaaaaaaaggacaggaaggttgaaggaaccgtgt 64
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct: 205 gaattcagagtgttatgaatt---aaaaaaaaaaggacaggaaggttgaaggaaacgtat 261
Query: 65 agggggtgaatgagggagtagatacaatcgatatacattgtataaatgtacaaaattgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agggggtgaatgagggagtagatacaatcgatatacattgtataaatgtacaaaattgtt 321
Query: 125 aaagtaggataaaatgttaaggatgtagctaacttgacaaagtgctttccattcaggcac 184
||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 aaagt--------------aggatgtagctaacttgacaaggtgctttccattcaggcac 367
Query: 185 gaagttcagctcccagaactctcataaagaaatggtcttggtgtaactctagagctagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaagttcagctcccagaactctcataaagaaatggtcttggtgtaactctagagctagag 427
Query: 245 aggaagaaaccagaggatcccagtagctggattgcctgagagaccctgcctcaaataaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggaagaaaccagaggatcccagtagctggattgcctgagagaccctgcctcaaataaat 487
Query: 305 aaggtggagagtgatatataaaagaaacctgaccttgacctcaggcctccacatacatgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaggtggagagtgatatataaaagaaacctgaccttgacctcaggcctccacatacatgc 547
Query: 365 ttttgagtgtacacacacacacacacacacacacacna-----------agagagagaga 413
|||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 548 ttttgagtgtacacacacacacacacacacacacac-acacacacacacagagagagaga 606
Query: 414 ------gagtagttaaaacggacttggacatatag 442
|||||||||||||||||||||||||||||
Sbjct: 607 aagagagagtagttaaaacggacttggacatatag 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 839
Length adjustment: 9
Effective length of query: 433
Effective length of database: 830
Effective search space: 359390
Effective search space used: 359390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_h16.g1 MSMg01no357_h16.g1 CHROMAT_FILE:
MSMg01no357_h16.g1 PHD_FILE: MSMg01no357_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:29 2005
(473 letters)
>mm_chr16_11475952_11476824
Length = 873
Score = 837 bits (433), Expect = 0.0
Identities = 463/473 (97%)
Strand = Plus / Minus
Query: 1 agacaagaactgtacagttactcctgttctgagcaggacagccagctggaagagtcacag 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agacaaaaactgtacagttactcctgttctgagcaggacagccagctggaagagtcacag 614
Query: 61 atcactggaattagtcctctcaagaggtaggacaacaagggaaaatcagtctttgcattc 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 613 gtcactggaattagtcctctcaagaggcaggacaacaagggaaaatcagtcttcgcattc 554
Query: 121 ctgggtggaacagtgactgtgccatctgcagccagtagccaagctgagacttagtgtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctgggtggaacagtgactgtgccatctgcagccagtagccaagctgagacttagtgtcag 494
Query: 181 ggtcctggaaaaagtaaaaaggtcctctggatgcgataaggcatcacatgccaatgagcc 240
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 493 ggtcctggaaaaagtaaaaaggtcctctggatgtggtaaggcatcacatgccaatgagcc 434
Query: 241 atgtcaggagtgccccccaggtaccacagccataaccactttcagatccctgaaagcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 433 atgtcaggagtgccccccaggtaccacagccataaccactttcagatccctgaaaacaga 374
Query: 301 gatcctaggccaaggacagaaactgtcaccttcacagttcacctaggaccatgttactta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gatcctaggccaaggacagaaactgtcaccttcacagttcacctaggaccatgttactta 314
Query: 361 tgatgtaatccacgctgttcagccacatggcccttctcagtctacacacctccatataca 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 313 tgatgtaatccacgctgttcagccgcatggcccttctcagtctacacacctccatataca 254
Query: 421 ctgttgggagaagctaacagtaggactgaccacaccaacagaaacagaactca 473
||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 253 ctgttgggagaagctaacattaggactgaccacacaaacagaaacagaactca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
