BAC Information

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BAC

Clone NameMSMg01-357P02
Chromosome16 (Build37)
Map Location 24,177,271 - 24,177,639
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009
Downstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357P02.T7 (MSMg01no357_p02.b1)MSMg01-357P02.TJ (MSMg01no357_p02.g1)
ACCAG467719AG467720
length738750
length of high quality
(start - end)
500 (43 - 542)368 (73 - 440)
definitionCHROMAT_FILE: MSMg01no357_p02.b1 PHD_FILE: MSMg01no357_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:05 2005CHROMAT_FILE: MSMg01no357_p02.g1 PHD_FILE: MSMg01no357_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATATATTGCTTTCTCTTAGGTTGGTTCTACTTCCTATTAGCAGCTTT
TCTGGACATGTAACCCACAGCTCTGGCATCTCCAATATTTTAGGGTCCCT
AAGGTAACCCAGACTTCACCTTCATAGCTCCACACAATGGCCTGTCTAGG
GTTCCATGCAGGGATACCCTGACACATGCCTGGCCGCAGCAGCTTTCTTT
AGTTATGGCAAATGATTCTATAATCTTTCTATCCTAGTCTCTAAAAGTCA
GAACCTTGTGGCCGAAGCTGCCAATTTCTGCTGCTTGCTGGGGCTGAAAC
ATGGCCTCTTTGTTCAAATATATTTTTGCCAGCTTTCTTTGTTTTTAATA
GTTTATTTCCACTGCCTAAGCTTGGCTGTCTTGGAACTCTTTCTATAGAC
CTGGCCAGCCTTAAACTCAGAGATCTGCCTGTTTCTGCCTCCAGAATTTT
CTATTTCTCCTTGTTCAACTTGCGTGTTTTCATTATAGATCTTTCCAAGC
ATAGATAAAAATAACTACACAGCATAGTCTATACTAGGTTGTTTTGAAAT
TTCCTCTGCCAGTGTCATTAATCCCAAACTCTTCCATTTATCTTCCAGCA
GACTTTTCTGACTATTGCAAAAAACAACCTCATTCTTATTCAAAACATCA
TCAAAAATGACTTCCTTCCCACATTCCAAAAGTCTTCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATATTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCCCTCCTTCCTTCC
TTCCCTCCCTCTCTCCACCCTCTCCTTTCTGCGAGTGTTCCAGTGGCGAG
TGGGGATTAGAAGAACTTATCTGACCTTTTGTACTCCCCTACTGGAGTAA
AAGCTGTGCCTTAAAGCTCTTCCTCATGGCAGAACTCTTAGGAATGTCCC
TAGACTGCCAGTTGGACAATAGATACCCATAGCCCGAAGGAGTTAGGGAG
GGGTAAGCCGAAGAACCTGGTATGGAGCTGGTGGAGAGGTTACATCCAGA
AGCCGCGGTGTATCATCTCCAGGGATGAGGGGTGGGGAGGTTCTCTGCCA
TCCTAAATACATAGTTTTCCCAACTCTGTATTTACAGCTTCCTGCTTTTT
CTACTTAACATTGGTCGTCTGACTCACTCCCCTCCCCCATTATCCATCGA
CTTATTAATATATAGGCTCTCGTTTCAAACTTCTTTGGATTTTAATTAAT
GTCTGTTTCTCTATTTATTATTTCCTCAATGTTTCCCGTTCACTATTGGA
CACCTTAGTCTTTGTAATCTTTATCCTGCGCTCATTTGAAATTCATACAT
AATTCCTTACATCCTTTTCAACTACCTCCATTTATATTATCTAACAAACN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_p02.g1 MSMg01no357_p02.g1 CHROMAT_FILE:
MSMg01no357_p02.g1 PHD_FILE: MSMg01no357_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:05 2005
         (368 letters)



>mm_chr16_24176978_24177745
          Length = 768

 Score =  636 bits (329), Expect = 0.0
 Identities = 359/369 (97%), Gaps = 1/369 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattctctctctctctctctctctctctctctctctctctctctctctct-ctctctct 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | 
Sbjct: 662 atattctctctctctctctctctctctctctctctctctctctctctctctccccccccc 603

                                                                       
Query: 60  ctcgtccctccttccttccttccctccctctctccaccctctcctttctgcgagtgttcc 119
           | ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 602 cccgtccctccttccttccctccctccctctctccaccctctcctttctgcgaatgttcc 543

                                                                       
Query: 120 agtggcgagtggggattagaagaacttatctgaccttttgtactcccctactggagtaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agtggcgagtggggattagaagaacttatctgaccttttgtactcccctactggagtaaa 483

                                                                       
Query: 180 agctgtgccttaaagctcttcctcatggcagaactcttaggaatgtccctagactgccag 239
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 482 agctgtgccttaaagctcttcctcatggcaggactcttaggaatgtccctagcctgccag 423

                                                                       
Query: 240 ttggacaatagatacccatagcccgaaggagttagggaggggtaagccgaagaacctggt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttggacaatagatacccatagcccgaaggagttagggaggggtaagccgaagaacctggt 363

                                                                       
Query: 300 atggagctggtggagaggttacatccagaagccgcggtgtatcatctccagggatgaggg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atggagctggtggagaggttacatccagaagccgcggtgtatcatctccagggatgaggg 303

                    
Query: 360 gtggggagg 368
           |||||||||
Sbjct: 302 gtggggagg 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)