BAC Information

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BAC

Clone NameMSMg01-358M20
Chromosome16 (Build37)
Map Location 45,294,451 - 45,294,873
singlet/doubletsinglet
Overlap genenone
Upstream geneSidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla
Downstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358M20.T7 (MSMg01no358_m20.b1)MSMg01-358M20.TJ (MSMg01no358_m20.g1)
ACCAG468370AG468371
length757728
length of high quality
(start - end)		450 (36 - 485)423 (65 - 487)
definitionCHROMAT_FILE: MSMg01no358_m20.b1 PHD_FILE: MSMg01no358_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:09 2005CHROMAT_FILE: MSMg01no358_m20.g1 PHD_FILE: MSMg01no358_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTTC
CTGACTTCATTTGATAATGAATAGTGAAATGGCACCTAGCTAACTTACTT
TTTGGTCATGGTGTTTCATTGGAGCAATAATAATTCTAACTAGGGCAAGT
TTATATCAGGATCATAGGGTACCATTGTGATAGGCCTGGCCATGTTGCTT
TTCTGGTAGATTGTGGAAGCCCTTTGGAACTTTGGGCTAACAAAGCTGTT
GAGTATTGAGGGATCAGTGGGATATTTTGTAGGAACTGGGAAACTCAAAA
TGTTAAGAGCAATGCAGAATATGAAGACCATGGATTGTGAAGTTTCAAAG
GGACCATTAAAGTCTATATCAGGGCCATTTGCTATTTTGAGTTGAGAGTC
TGTGGTTCTGGTTAGCTGTGATTGAAAAATCAGCTGTGATTCACAAGACA
CCAGAGCCAATAAAGTAAAATCTTTGCATTACTGGGACAGTAGATACTGC
TCACCTGGAGAGAAGAAATCAGTGGTGATTAAGAAAAGACTTGCATCACT
GAGTTAAAAATCTCTGGAAGGTGATTCCTCCGATTCTACCCCAAAGAAGC
TCTCTTAGAAAACATGGCCCAGGTTTGTACCCTGCCCAAACAGCCCAAAT
GTGGGGATGGTAAGTCTTCCCAGGTGGGAATGGGGTTTTTTAAAACCTTG
TAAGGGATCCTTGAAAAAAAAAGGTAAAAAAGTGGGACCCCGCGCCGGGC
CAGTTTN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAAGAGATGAAAAGAGAAAAGGGAAAGTTATGTTTT
GTGGTGTAAGAACTCAGAAAGTGGGCAGGTTGAGCAGAACACCAGCCTCC
GACTTTTGTGCAAGCTGTGTAAACAGCTGCATCTGGAAGGGGCTCTGGGA
AGAATAAATGCATCATTGAATTGCAGTGTTAATTATTCCTCCTATCTTCT
TATCATGACTTTGGTGAATCAGCCTTCTTGAGGTCTTTTGGTCAGGTGCT
TGACATACCCAGCTGGATTAACTTTAAAGGGAGGAGACAGTAATATGCAA
GGTTCTAATCTTTGGAGCTAATTAGAAAGTCATGTCTCCACCCAAAGCCA
GAGGTAGAACTTGGATTCCATTTCTCTTAATGCCTCAAGAAGCTCTAGAA
CCATTACCTTTTCAGAAAGTATTTTANATCTCGTGTGTGAGTGAGTGTGT
GTGTGTGTGTGTGTGTGTNTNNNNTNTNNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTGTTTTTTTTTTGTGTNGG
GTTTTTTTGTTTTTTTTTTGTTTTTTGGCTGTTGTCGTTTTTGTTTTTGT
GTTTTGTTTTTCCCTTTTGTTTGTTGATCTTGCCCCTCGCTTTTCCTCGC
TCTGTTCTCTATTTACTCATCCGTCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_m20.g1 MSMg01no358_m20.g1 CHROMAT_FILE:
MSMg01no358_m20.g1 PHD_FILE: MSMg01no358_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:09 2005
         (423 letters)



>mm_chr16_45294251_45295073
          Length = 823

 Score =  812 bits (420), Expect = 0.0
 Identities = 422/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagagatgaaaagagaaaagggaaagttatgttttgtggtgtaagaactcagaaagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagagatgaaaagagaaaagggaaagttatgttttgtggtgtaagaactcagaaagtgg 260

                                                                       
Query: 61  gcaggttgagcagaacaccagcctccgacttttgtgcaagctgtgtaaacagctgcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggttgagcagaacaccagcctccgacttttgtgcaagctgtgtaaacagctgcatct 320

                                                                       
Query: 121 ggaaggggctctgggaagaataaatgcatcattgaattgcagtgttaattattcctccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaggggctctgggaagaataaatgcatcattgaattgcagtgttaattattcctccta 380

                                                                       
Query: 181 tcttcttatcatgactttggtgaatcagccttcttgaggtcttttggtcaggtgcttgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttcttatcatgactttggtgaatcagccttcttgaggtcttttggtcaggtgcttgac 440

                                                                       
Query: 241 atacccagctggattaactttaaagggaggagacagtaatatgcaaggttctaatctttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacccagctggattaactttaaagggaggagacagtaatatgcaaggttctaatctttg 500

                                                                       
Query: 301 gagctaattagaaagtcatgtctccacccaaagccagaggtagaacttggattccatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagctaattagaaagtcatgtctccacccaaagccagaggtagaacttggattccatttc 560

                                                                       
Query: 361 tcttaatgcctcaagaagctctagaaccattaccttttcagaaagtattttanatctcgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tcttaatgcctcaagaagctctagaaccattaccttttcagaaagtattttaaatctcgt 620

              
Query: 421 gtg 423
           |||
Sbjct: 621 gtg 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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