BAC Information

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BAC

Clone NameMSMg01-359B21
Chromosome16 (Build37)
Map Location 18,880,783 - 18,881,182
singlet/doubletsinglet
Overlap geneHira
Upstream geneDgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40
Downstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359B21.T7 (MSMg01no359_b21.b1)MSMg01-359B21.TJ (MSMg01no359_b21.g1)
ACCAG468608AG468609
length798766
length of high quality
(start - end)
424 (16 - 439)327 (54 - 380)
definitionCHROMAT_FILE: MSMg01no359_b21.b1 PHD_FILE: MSMg01no359_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:33 2005CHROMAT_FILE: MSMg01no359_b21.g1 PHD_FILE: MSMg01no359_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCACTATTCCGAGAGGATCCGCGGAATTCCACTAGGAGCTCAGGAG
ATAGCTCAGTGAGTAAAGAGAGTCTGCAACACAAACATGAGAACCTACTA
ATCCCCAGCACCCATATAAAAACCCAACAATGTCTATTCCTCCACCTCTA
ACTCCAGCTTAAGTGAGATGGGCAAGAAGGGAATCACTTCCTGATTGCCA
GGGTAGATCTGTCTTAGGGATATACAGAACAGAATGATGATAAAGCAGAG
CACTTGCAAACCTCTCCTAGTCTCCAAATATGTGTACGCATACATGTGTA
CATACACCACACACACACACACACACACACACACACACACACACACACTC
AAGAAAACAGCACTGCCCATCTCTCATCTGTATTCTTTCTCCAGCACACT
TATAAACTCAAAAAATGATATAAATCTACACTTCCTGCATGTAATGGCCA
AGTCCCACTAGATCTTCCTTTATCTACAGTGCTTCCTCCTCTTTTCTCAT
CTCTGCCACCAACTTTCCTCATTGTCTTAGCACATCTTACCAAGATCCGG
AGGTCATCTCCTAAAGTCCAGGAATTTCCCAAAAACATTTTAGGTGCCCA
AACCCCTTTTATTTTTTCTTTGACCCTTCCCCTAAACTCCTTAAAGGAAA
GGTTTTAATTCCCCCCCACAGTGTTTCCTTTTATCCACGCCTTCCTCCCA
TTAAATTACTTCCCCCCCCTCTTTCTTTCTGCTTCAATATTTATGTGCCA
CTCTATCATCTGCTCCCCTATTAGTTCCCGCCCGCCTTCTTCTCTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCCATCCCGCTGGCTGAATCATTGCATGCTCTGGCCAGGGCATAGGCT
CTGTGTACTGGCTGGATTTATCAAACTAGAGTCACCTGGGAAGAGGGAAT
TTGGTTCCATTGGACTGTCCTTTGGCTCGTATGCAGGACATTTCCTTGAT
AAGTGATTGTTGTGAGGCTGGTGGTCCTGGGTGGTATGAGAAAACAGGCT
GAGCAAGTTAGTTAGCAGTGCTCCTCTACGACCTCTGCTTCAGTTCCTGC
CTCCAGGTTCCTGCCCTGACTTCTCTTCATGGAGGACTGTGAGCTGAAGC
AAACTCTTCCACCCCCAGTTACCTTTGGCTGTGCTGTTTTTCACACCCCA
ATGAGGAAAACTATTGCCCCCACATCTGCACCATCTGCCTCTACGTTTCC
TTTGTTGTGAACAGACCTTACGATCTTTCATCTCTTTACCTTTACATCCT
CCATTTGGCTCTGTCTAATATGTTCCAATTTTCCCCCTCTTTTCTCCCCT
CCTTTTTCTCGCCTTTTTTTAATTTTATTTTTTCCCCCCATTTCCCCTTA
TCCTCTTACTTTTTTTCTTCCCCTCTTTTATTTTCCTTTCCTTTTCCTAC
CTTTCCTCTTCTTCTTTTTTTTCATTTTTCTCCCTTCCTCTATTTATTTA
TATCCTTATCCCAATCCCCTCTTTTTTCCCCTCCCCCCTCCCTTATCCCT
TTTCTTTCCCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_b21.b1 MSMg01no359_b21.b1 CHROMAT_FILE:
MSMg01no359_b21.b1 PHD_FILE: MSMg01no359_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:33 2005
         (424 letters)



>mm_chr16_18880602_18881425
          Length = 824

 Score =  681 bits (352), Expect = 0.0
 Identities = 392/412 (95%), Gaps = 12/412 (2%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattccactaggagctcaggagatagctcagtgagtaaagagagtctgcaacacaaaca 72
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 581 gaattccactaggagctcaggagatagctcagtgagt--agagagtctgcaacacaaaca 524

                                                                       
Query: 73  tgagaacctactaatccccagcacccatataaaaacccaacaatgtctattcctccacct 132
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgagaacctactaacccccagcacccatataaaaacccaacaatgtctattcctccacct 464

                                                                       
Query: 133 ctaactccagcttaagtgagatgggcaagaagggaatcacttcctgattgccagggtaga 192
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctaactccagcttgagtgagatgggcaagaagggaatcacttcctgattgccagggtaga 404

                                                                       
Query: 193 tctgtcttagggatatacagaacagaatgatgataaagcagagcacttgcaaacctctcc 252
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tctgtctcagggatatacagaacagaatgatgataaagcagagcacttgcaaacctctcc 344

                                                                       
Query: 253 tagtctccaaatatgtgtacgcatacatgtgtacatacaccacacacacacacacacaca 312
           |||||||||||| |||||| ||||||||||||||||||||| || |||||||||||||||
Sbjct: 343 tagtctccaaatgtgtgtaggcatacatgtgtacatacaccccaaacacacacacacaca 284

                                                                       
Query: 313 cacacacacacacacacacactcaagaaaacagcactgcccatctctcatctgtattctt 372
           |||||||| |||||          ||||||||||||||||||||||||||||||||||||
Sbjct: 283 cacacacatacaca----------agaaaacagcactgcccatctctcatctgtattctt 234

                                                               
Query: 373 tctccagcacacttataaactcaaaaaatgatataaatctacacttcctgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tctccagcacacttataaactcaaaaaatgatataaatctacacttcctgca 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)