BAC Information

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BAC

Clone NameMSMg01-359G22
Chromosome16 (Build37)
Map Location 67,318,036 - 67,318,383
singlet/doubletsinglet
Overlap geneCadm2
Upstream genenone
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359G22.T7 (MSMg01no359_g22.b1)MSMg01-359G22.TJ (MSMg01no359_g22.g1)
ACCAG468848AG468849
length852882
length of high quality
(start - end)
353 (24 - 376)100 (55 - 154)
definitionCHROMAT_FILE: MSMg01no359_g22.b1 PHD_FILE: MSMg01no359_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:55 2005CHROMAT_FILE: MSMg01no359_g22.g1 PHD_FILE: MSMg01no359_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGACTCACTATAGTGCAGAGGATCCGCGGAATTCATTTCCTTAATTTTA
AAATATTAATCAATTTATTCCAAATAATTATAACTTTTTCTACCAAGTTT
AAAAACAGTTATACTTTTTTTTCCCACACAGCTTATTCGTGAGGTGCTCC
ATACAACACCACTGAAAACAAAGCAAAGTAATGCAAACCAGACCTGGATA
AAGACAGGAATGAAAATCCATTTCATAAGCTGAAAATAATAACAGTTACT
AATTGTCTTGCACAGAGGCATTGACTTTTACTTGTAACCAAGTCTATGCT
CCTCAATAAGTTTGCCATTCCTGCAGTGTCTAATTCTCACATGCTTTTCC
AAGGTGGATAGGAAACCATTTTTAGAGGTAAAAAACCAGAACATTAACCT
TGTGTGGCTTTGCCAGAATATATGAATCTCTTGCGCATTTCGCTCCGTCC
TTTTTCCGTCTCCTTTTTATTCTACTTCTTTCCATAGGTTCCTCCAACAT
CTTATTTTCTTCCCCTACCCTTCCCTTCCTCTTTCATTTCTTCTCACCCT
TTACATCTTTTCCTGTTCTTTCCCCCTCATTTCCTATTTTTTTTTCTTAT
TACCTCCCTTTATTTTTTCTCACTTTCCATCTTTTCTTTAATCTTCTTCT
TCCTCTTCTTTCCCCCACATATTATCTCCTCATATATCCCCTCTCACTAT
CTCCCCCCTCACTCCCTCTCCTTTTTCCTACTTCCTTCCCCTTTTACACT
ACCCCTCCTATCTCCATTGAATTTCGCGCCCCACACAATCTTTTCTTCTC
TTTTCCCTCTCCACCTCTCTCTTTTTTTTCTCTCTCTCCTTCCCTCTCTT
TN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTTTAAATTGATGATGAGTTTTTCTTTGTTTGACTGTTTGTTTGT
TTTTGGTTTTGTTTGCTGCTTGGTAGTCAACCTTAATGGCGTTTCCTATA
CAAGTGTACACAGAACTATGGCCTACATAATAAATTAAAGTTTATTTTCT
ACAGCACTTTCCAATCTTATTACTGCTCTAACACCTTACATTCACCCACA
TTACTGTACCCTATTGTTCTGCATGACATATCAACTCCTTCCCCCACCCT
TCCCCTTTGTTTTCCCTCCTCTTCTCTTTTCCACTCTACTCCCTTTTCCC
CTTTTTCATCTCTCTCCCCCCCCCCTCCTCTTTATTTTCCTTTCTCCCCC
CCCCCCCCCCTCTCCTTTCTATTTTCCCTTTCCCTTACCATCTCACTCCC
CCCTTTTTTTATCTACTCCTTCCCCTCTCATATCTTCCCTCTTTATATTC
CCCCTCCCCTCCCCCTCCCCTAACCCTTCATCTTTTCTTCTCTTCTCTTT
TTCTACCCCCTCTCTTTTTTCCCTCCTCTCTTCTCCCTTTATATTTCCTA
TCCTCTCTACCTTCCTTTTTCTTCCCCTTCACTCTTCTCTACCCTCACAT
TTCCCCGCTTTCCCCTCTCTTCCCCCTCCCTCTCTTTTCCCATCCCCTCT
TTTCCCTCTATTCCTTTTCTCCTCTCTACCTTCCCTCCTTCTCCACCTTT
ACATCTCTTTTCTAACCCTTCCATCCTCTCTTTTCCCTCCATCTTTTCTT
CTACACTTTTACCACCCTATTCTTTATCCTCTTCTTTTTGNTACGCACCT
CCCCCTATTATTCATTCCCTCATACTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_g22.b1 MSMg01no359_g22.b1 CHROMAT_FILE:
MSMg01no359_g22.b1 PHD_FILE: MSMg01no359_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:55 2005
         (353 letters)



>mm_chr16_67317830_67318583
          Length = 754

 Score =  642 bits (332), Expect = 0.0
 Identities = 344/348 (98%), Gaps = 1/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcatttccttaattttaaaatattaatcaatttattccaaataattataacttttt 66
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 207 gaattcatttccttaattttaaaatattaatcaatttattccaaataattataatttttt 266

                                                                       
Query: 67  ctaccaagtttaaaaacagttatac-ttttttttcccacacagcttattcgtgaggtgct 125
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 267 ctaccaagtttaaaaacagttatactttttttttcccacacagcttattcatgaggtgct 326

                                                                       
Query: 126 ccatacaacaccactgaaaacaaagcaaagtaatgcaaaccagacctggataaagacagg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccatacaacaccactgaaaacaaagcaaagtaatgcaaaccagacctggataaagacagg 386

                                                                       
Query: 186 aatgaaaatccatttcataagctgaaaataataacagttactaattgtcttgcacagagg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatgaaaatccatttcataagctgaaaataataacagttactaattgtcttgcacagagg 446

                                                                       
Query: 246 cattgacttttacttgtaaccaagtctatgctcctcaataagtttgccattcctgcagtg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cattgacttttacttgtaaccaagtctatgctcctcaataagtttgccattcctgcagtg 506

                                                           
Query: 306 tctaattctcacatgcttttccaaggtggataggaaaccatttttaga 353
           |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 507 tctaattctcacatgcttttccaaggtggaaaggaaaccatttttaga 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 754
Length adjustment: 9
Effective length of query: 344
Effective length of database: 745
Effective search space:   256280
Effective search space used:   256280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)