BAC Information

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BAC

Clone NameMSMg01-359L09
Chromosome16 (Build37)
Map Location 73,925,899 - 74,115,357
singlet/doubletdoublet
Overlap geneRobo2
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359L09.T7 (MSMg01no359_l09.b1)MSMg01-359L09.TJ (MSMg01no359_l09.g1)
ACCAG469061AG469062
length750750
length of high quality
(start - end)		493 (29 - 521)393 (59 - 451)
definitionCHROMAT_FILE: MSMg01no359_l09.b1 PHD_FILE: MSMg01no359_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:15 2005CHROMAT_FILE: MSMg01no359_l09.g1 PHD_FILE: MSMg01no359_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,114,869 - 74,115,357)(73,925,899 - 73,926,289)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGTCCTTTAN
AGAGAAACTGTAATGCTTATAGTACTTTATTCTTCTGTCAGCAGCTAAAC
TCTGGTGATTAATTTCTTAGCAACAAACACAGTAAAGTGTGCTAAACATT
GTACTTCAGTTTTATCTCGTTATCTTTGTAGGATAGCTCAGAAGTGTGTA
TTCATATTTTTCTCCAATTTGGAAATGATACAGATAAGACCATATAAAAG
TTAGAAAACTTTCCTAGCTTGTGGATAACCTATCTGGAATTGATTCAGGT
TCTAACTTTTAATGTTTGTTCTCATAATCCCAACATGATTCCTGCTTAAA
TACTAAATTAAACAATAACAGATGTGTACCATTTTTTTCTCCTTTCTTTT
AATAAGGGGGAGAATATAGAAGGAAAATTTATGCATGTGGAGAGGACTTT
TAATTTTTAAAATACATAAAACTCTTTAATCTTTTTAGCGTTTCATAAGC
ACACGATATAATACATTTGATTACNATTTACACCATAGATATTTCAGCTA
AACAGCCAGTGCGCCAACACTTCTGTTAGTGCTACAGAAGAATATTTTGT
CCGTGTTCCTTAATTATCAGAGAAGTTATTCTATTTTTTCGACTTACCTA
TTAAATGAAGAAAAAATTTTTTATTTAATAAATGGCGCCTTTTGTAATTA
TACAATTGGGGCAATTTACATATCCGCAATTTTTTTTCCCCTTTTTTTTT


AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGTTCTTACTGTCTGTAGCTCCTCAGGGCTGAGGTGAAAAAT
ACTTCTTTCCCCCACACATCAAATTCTCAGCACTTAAGGCAAATAAAAAC
TCAGAAGGAAATAAGAACTTAAATATATAGCATAATCTCTTTTTATACAC
TTTTTCATGTATATAGTAAGAACACTCTTTTTAGCTATTTGTAATAGTAA
ATGACTATTTCAAAAATGAAAAATAATATCATGCATTTGAGTATATATTA
ATAATGTAATCACTATATACATTAGATAACATTACATATCAATATTCTAA
GACTAGTTTGTGTAAAAACATAAAACTATACCAATATTAACTGTCTCATC
ATACATTGAATTATTTCGTATTTTTCTACTGTTTAACAAGATCACATGGG
AAGTTTTGCATTCATGCAGATTAAATTAATTTTATTTCAGTGTGTAATCA
TTATATGTATTTCAAGAAGATTTGTTGGGGAAAACAAAAGAGAAATAATT
CTAAATAATCTAAATTTTTCTAGATGTGATTTTTAAAAAGATTAACACCC
CTTTCTTTTTTCCCGGGTAGCCCAAATTCCATTTCTCAATTTTTATGAAA
AAACCCTAAAAAGAAAACGGGGAGGAGAAATCCCGAAGGAACCTTTTGTA
GAGACTATAAATCAACTTTTTTCTGGCTTAAATATATCCTTGGGGGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_l09.b1 MSMg01no359_l09.b1 CHROMAT_FILE:
MSMg01no359_l09.b1 PHD_FILE: MSMg01no359_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:15 2005
         (493 letters)



>mm_chr16_74114665_74115557
          Length = 893

 Score =  924 bits (478), Expect = 0.0
 Identities = 486/489 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtcctttanagagaaactgtaatgcttatagtactttattcttctgtcagc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaattctctgtcctttaaagagaaactgtaatgcttatagtactttattcttctgtcagc 634

                                                                       
Query: 65  agctaaactctggtgattaatttcttagcaacaaacacagtaaagtgtgctaaacattgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 agctaaactctggtgattaatttcttagcaacaaacacagtaaagtgtgctaaacattgt 574

                                                                       
Query: 125 acttcagttttatctcgttatctttgtaggatagctcagaagtgtgtattcatatttttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 acttcagttttatctcgttatctttgtaggatagctcagaagtgtgtattcatatttttc 514

                                                                       
Query: 185 tccaatttggaaatgatacagataagaccatataaaagttagaaaactttcctagcttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tccaatttggaaatgatacagataagaccatataaaagttagaaaactttcctagcttgt 454

                                                                       
Query: 245 ggataacctatctggaattgattcaggttctaacttttaatgtttgttctcataatccca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggataacctatctggaattgattcaggttctaacttttaatgtttgttctcataatccca 394

                                                                       
Query: 305 acatgattcctgcttaaatactaaattaaacaataacagatgtgtaccatttttttctcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 acatgattcctgcttaaatactaaattaaacaataacagatgtgtaccatttttttctcc 334

                                                                       
Query: 365 tttcttttaataagggggagaatatagaaggaaaatttatgcatgtggagaggactttta 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttcttttaataagggggagaagatagaaggaaaatttatgcatgtggagaggactttta 274

                                                                       
Query: 425 atttttaaaatacataaaactctttaatctttttagcgtttcataagcacacgatataat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 273 atttttaaaatacataaaactctttaatctttttagcgtttcataagcacatgatataat 214

                    
Query: 485 acatttgat 493
           |||||||||
Sbjct: 213 acatttgat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_l09.g1 MSMg01no359_l09.g1 CHROMAT_FILE:
MSMg01no359_l09.g1 PHD_FILE: MSMg01no359_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:15 2005
         (393 letters)



>mm_chr16_73925699_73926491
          Length = 793

 Score =  741 bits (383), Expect = 0.0
 Identities = 389/391 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcttactgtctgtagctcctcagggctgaggtgaaaaatacttctttcccccacaca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tgttcttactgtctgtagctcctcagggctgaggtgaataatacttctttcccccacaca 260

                                                                       
Query: 61  tcaaattctcagcacttaaggcaaataaaaactcagaaggaaataagaacttaaatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tcaaattctcagcacttaaggcaaataaaaactcagaaggaaataagaactaaaatatat 320

                                                                       
Query: 121 agcataatctctttttatacactttttcatgtatatagtaagaacactctttttagctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcataatctctttttatacactttttcatgtatatagtaagaacactctttttagctat 380

                                                                       
Query: 181 ttgtaatagtaaatgactatttcaaaaatgaaaaataatatcatgcatttgagtatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtaatagtaaatgactatttcaaaaatgaaaaataatatcatgcatttgagtatatat 440

                                                                       
Query: 241 taataatgtaatcactatatacattagataacattacatatcaatattctaagactagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taataatgtaatcactatatacattagataacattacatatcaatattctaagactagtt 500

                                                                       
Query: 301 tgtgtaaaaacataaaactataccaatattaactgtctcatcatacattgaattatttcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtaaaaacataaaactataccaatattaactgtctcatcatacattgaattatttcg 560

                                          
Query: 361 tatttttctactgtttaacaagatcacatgg 391
           |||||||||||||||||||||||||||||||
Sbjct: 561 tatttttctactgtttaacaagatcacatgg 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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