Query= MSMg01no359_m03.b1 MSMg01no359_m03.b1 CHROMAT_FILE:
MSMg01no359_m03.b1 PHD_FILE: MSMg01no359_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:19 2005
(482 letters)
>mm_chr16_25719673_25720554
Length = 882
Score = 880 bits (455), Expect = 0.0
Identities = 473/483 (97%), Gaps = 7/483 (1%)
Strand = Plus / Plus
Query: 7 attccctgtcccttaatatgcatggtataactttccacagtggccttccagtgcctgaca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attccctgtcccttaatatgcatggtataactttccacagtggccttccagtgcctgaca 266
Query: 67 agtaggtgacgctggaattgtgaaacttcccttctgagctctcaaatgcattgttctagc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtaggtgacgctggaattgtgaaacttcccttctgagctctcaaatgcattgttctagc 326
Query: 127 cttagtgcttcatctagcagctatactctctcacctgcatccttttctcccttggaaaat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttagtgcttcatctagcagctatactctctcacctgcatccttttctcccttggaaaat 386
Query: 187 gcttttctgtgtgaatagctgtttgcattgtgagaaggtaatacctggactcccctatgt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcttttctgtgtgaatagctgtttgcattgtgagaaggtaatacctggactcccctatgt 446
Query: 247 tggcactttgctgatgttatgcccattaatatgaattttaaagcttgtaattaggtagga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tggcactttgctgatgttatgcccattaatatgaattttaaagcttgtaattaggtagga 506
Query: 307 aaatactaaatatttggatattaatagcattcacatatataccagaattacactaaatga 366
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaatactaaatatttgtatattaatagcattcacatatataccagaattacactaaatga 566
Query: 367 tttgtgggaaatacctttttttaaaaaatatttttattagatattttcctcattcacatt 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 567 tttgtgggaaatacctttttttaaaaaatatttttattagatattttcctcatttacatt 626
Query: 427 tccaatgctatcccaaaattcccccataccctcc-------ccccccccaacttctctac 479
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 627 tccaatgctatcccaaaattcccccataccctcctcctcccccccccccaactcctctac 686
Query: 480 cta 482
|||
Sbjct: 687 cta 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_m03.g1 MSMg01no359_m03.g1 CHROMAT_FILE:
MSMg01no359_m03.g1 PHD_FILE: MSMg01no359_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:19 2005
(356 letters)
>mm_chr16_25946870_25947626
Length = 757
Score = 654 bits (338), Expect = 0.0
Identities = 350/354 (98%), Gaps = 1/354 (0%)
Strand = Plus / Minus
Query: 1 cacccaagtccacacaggtactgacacccgagggccgttgctgtgcagataagctgtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cacccaagtccacacaggtactgacacccgagggccgttgctgtgcagataagctgtctc 495
Query: 61 gggtaattgggttgacatcattgagccaccttagaggatttgaatcccttccatgactcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gggtaattgggttgacatcattgagccaccttagaggatttgaatcccttccatgactcc 435
Query: 121 tgtcacctgtcatctgatagggaaacccccaggtttgcaggtgagtgattgattatgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgtcacctgtcatctgatagggaaacccccaggtttgcaggtgagtgattgattatgcaa 375
Query: 181 agcaaatg-aaaaaaaaaaaccttaaaagttcatgcttttcaacagggaagctttccctt 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agcaaatgaaaaaaaaaaaaccttaaaagttcatgcttttcaacagggaagctttccctt 315
Query: 240 aagttctgaccctgattttcacgcagaaggtgaggactgaggcccagttacaggaacgcg 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 314 aagttctgaccctgattttcacgcagaagctgaggactgaggcccagttacaggaacccg 255
Query: 300 aagaattgaaacacatgggaacacatgggagaagacacttaccaaaccaccttg 353
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 254 aagaattgaaacacatgggaacacatgggagaagacacttagcaaaccaccttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 757
Length adjustment: 9
Effective length of query: 347
Effective length of database: 748
Effective search space: 259556
Effective search space used: 259556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
