Query= MSMg01no359_o03.b1 MSMg01no359_o03.b1 CHROMAT_FILE:
MSMg01no359_o03.b1 PHD_FILE: MSMg01no359_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:28 2005
(492 letters)
>mm_chr16_72588825_72589716
Length = 892
Score = 878 bits (454), Expect = 0.0
Identities = 481/490 (98%), Gaps = 4/490 (0%)
Strand = Plus / Plus
Query: 5 gaattcacacttatc-cttggatcgtgtctctgctttatggacaaaatgcctattgttga 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacactta-cacttggatcgtgtctctgctttatggacaaaatgcctattgttga 263
Query: 64 gaataatttagaaataatgcactggcaagttgaatcagtttcgaagttattaagagattt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaataatttagaaataatgcactggcaagttgaatcagtttcgaagttattaagagattt 323
Query: 124 tgaatgtatggttataaacactcccatatgtaggccctgacagcggaatgtctcatgata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaatgtatggttataaacactcccatatgtaggccctgacagcggaatgtctcatgata 383
Query: 184 tcagactttcatgttgattgtgactctcatacgagtgtttcccacattcatatttcagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcagactttcatgttgattgtgactctcatacgagtgtttcccacattcatatttcagca 443
Query: 244 ctttatgttggtttaattaagattcttcaaaggttcaaatacaaatattcctgagaccaa 303
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 444 ctttatgttggtttaattaagattcttcaaaggctcaaatgcaaatattcctgagaccaa 503
Query: 304 tatagagcattctgtatttgtgtttcgggttaggaagggaatatgggaacaacacagttt 363
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 tatagagcattctgtatttgtgttttgggttaggaagggaatatgggaacaacacagttt 563
Query: 364 gtatcccattcagcccatccttggtgtctttttgcctctccaaccggttcctttgtatct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtatcccattcagcccatccttggtgtctttttgcctctccaaccggttcctttgtatct 623
Query: 424 tgcagaatgaaactcaaacctcatcatttttctacaactggcacagctatcctggtt-tc 482
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||
Sbjct: 624 tgcagaatgaaactcaaacctcatcatttttctacaactgccacagctatcccg-ttctc 682
Query: 483 gccttttcta 492
||||||||||
Sbjct: 683 gccttttcta 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_o03.g1 MSMg01no359_o03.g1 CHROMAT_FILE:
MSMg01no359_o03.g1 PHD_FILE: MSMg01no359_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:28 2005
(450 letters)
>mm_chr16_72773450_72774299
Length = 850
Score = 789 bits (408), Expect = 0.0
Identities = 440/452 (97%), Gaps = 4/452 (0%)
Strand = Plus / Minus
Query: 1 ttgggctccatttcagaccagctctctcaggagacttgggggggtagaacgttggtagtc 60
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 650 ttgggccccatttcagaccagctctctcaggagacttgggagggtagaatgttggtagtc 591
Query: 61 tggtaacaaaccaggcaggtagactgaagacacacctgactgctggagagtttaagaaaa 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 590 tggtaacaaaccaggcaggtagactgaagacacacatgactgctggagagtttaagaaaa 531
Query: 121 cataccccgaggttagtcacactttgagaaggttagataaaagacat--catttaatttg 178
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 530 cataccccgaggttagtcacactttgagaaggttagataaaag--atgacatttaatttg 473
Query: 179 tcacaacagaacaccacgcccactattccaataatgcttcaatcaaagagaatggtttac 238
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 472 tcacaacagaacatcacgcccactattccaataatgcttcaatcaaagagaacggtttac 413
Query: 239 attttggtaaaatggagccaatgacaagaacttaaagcataagggtgaaaacacatctcc 298
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 412 attttggtaaaatggagccaacgacaagaacttaaagcataagggtgaaaacacatctcc 353
Query: 299 accgcttcttgggaaggttcaaacttctatgtatagaaagtagcttagaattggcagttt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 accgcttcttgggaaggttcaaacttctatgtatagaaagtagcttagaattggcagttt 293
Query: 359 ttaagcctactttgttagatcataactacattgattcaccgcagaaatcatcactccttt 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 292 ttaagcctactttgttagatcataactacattgattcaccgcaaaaatcatcactccttt 233
Query: 419 gtaagcagaaacctaggcgtgccctcctgcac 450
||||||||||||||||||||||||||||||||
Sbjct: 232 gtaagcagaaacctaggcgtgccctcctgcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
