Query= MSMg01no360_g09.b1 MSMg01no360_g09.b1 CHROMAT_FILE:
MSMg01no360_g09.b1 PHD_FILE: MSMg01no360_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:08 2005
(218 letters)
>mm_chr16_31094074_31094698
Length = 625
Score = 389 bits (201), Expect = e-113
Identities = 216/225 (96%), Gaps = 7/225 (3%)
Strand = Plus / Minus
Query: 1 aacactacattgctgtggcttacttcattttctcaatgtactgacaaattggacgaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aacactacattgctgtggcttacttcattttctcaatgtactgacaaattggacgaggga 366
Query: 61 aaggactggagtgtagcaaggcttttatgaatagtttcaaaggaggctggctcttggatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaggactggagtgtagcaaggcttttatgaatagtttcaaaggaggctggctcttggatg 306
Query: 121 agttctgctgtgctcactgatagctttc-------tgtggcatgtggcagtattccggtc 173
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 305 agttctgctgtgctcactgatagctttctgtggcatgtggcatgtggcagtattccggtc 246
Query: 174 tacgcattatagagatgaacacacagtgctggccagacactcagg 218
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 245 cacgcattagagagatgaacacacagtgctggccagacactcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 625
Length adjustment: 9
Effective length of query: 209
Effective length of database: 616
Effective search space: 128744
Effective search space used: 128744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no360_g09.g1 MSMg01no360_g09.g1 CHROMAT_FILE:
MSMg01no360_g09.g1 PHD_FILE: MSMg01no360_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:08 2005
(399 letters)
>mm_chr16_30888843_30889641
Length = 799
Score = 679 bits (351), Expect = 0.0
Identities = 387/399 (96%)
Strand = Plus / Plus
Query: 1 ttgatcacagtggttacctcatgctcaaaggatgacaatttacagccttcaccctatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatcacagtggttacctcatgctcaaaggatgacaatttacagccttcaccctatctt 260
Query: 61 ctgtctcttacaaagttcctgtcccttccccacagtgtccattagccttagaacaggtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtctcttacaaagttcctgtcccttccccacagtgtccattagccttagaacaggtgc 320
Query: 121 tgtaaatatctttatagcctctggccctagaggctttgcaggtgtggttgctgtgtcaca 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgtaaatatctttatagcctctggccctagaggctttgcaggtatggttgctgtgtcaca 380
Query: 181 tgtgcatcagtaggtggtagagaggagcgactatgtctacatttcagtgttctgacctgt 240
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 381 tgtgcatcagtaggtggcagagaggagaggctatgtctacatttcagtgttctgacctgt 440
Query: 241 gaattattttgagatgaccctctaggcaggcccacctgggtttccaggatggcgagcaag 300
||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 441 gaacaagcctgagatgaccctctaggcaggcccacctgggtttccagaatggggagcaag 500
Query: 301 ccggggctagaagaacctcacctgtgatcatgggccctgggtgggagtaagccctagata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccggggctagaagaacctcacctgtgatcatgggccctgggtgggagtaagccctagata 560
Query: 361 tacgaccctcaaaaggggccacttgggtggatctggcaa 399
||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tacgaccctcaaaaggggccacttgggtggacctggcaa 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
