BAC Information

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BAC

Clone NameMSMg01-360N12
Chromosome16 (Build37)
Map Location 67,608,902 - 67,609,146
singlet/doubletsinglet
Overlap geneCadm2
Upstream gene9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360N12.T7 (MSMg01no360_n12.b1)MSMg01-360N12.TJ (MSMg01no360_n12.g1)
ACCAG469919AG469920
length1,293746
length of high quality
(start - end)
---247 (70 - 316)
definitionCHROMAT_FILE: MSMg01no360_n12.b1 PHD_FILE: MSMg01no360_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:42 2005CHROMAT_FILE: MSMg01no360_n12.g1 PHD_FILE: MSMg01no360_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGATCGTGCTGTATATGTCGAATATCATGATCAGNCTGTGTGGTGGTGTG
GTGTGGTGGTGGTGCTCTTCTTNCCCCCAGACCACAACACAAGACGTACA
GGTAGTGGCACATCTATTAACTGGCCTTGGCCGATACCGCGTGTGTACGG
TGCTTCGTCGCCTCTGGTCGAAGCTCCTCCACGTACANATGATCGCAAAC
GACAAGACGCTGTACTTCGCACAACAAATAACGGCCCGTCGAATATATGT
AGGCGGGTGTTTGTTACGGGGGTACCTACTATGTTACTCTTGCGTAGCTG
TGCCGTATATAAATCGATGTGACCGCGCGTAAGCCAGACCAGTGCACAAC
TGTGTAGCACGACGAGCACCCATGCGCTACACTGCTATGTGGCTCGCGCG
CCGCCGGCGTGTGTTGATGGGCGCGTGCGATGTTGGCGCGGCGACCGCTG
CCGCGTGATCGCGCACCTGTGGCACTACGTTCGCGCATCTCCATAGATCA
TCACATACCCATCATATTCCCGGTACTATTTCGTGGTCTCTACTGCGTGT
GGCGCGCGTCGAGAGTTCATAATCCCTTTAATATAATACATATGACGGCC
AAACCTATCGATAATTATACACTAATCATATACCGTCATATAGCGCATGC
TGCAGCGCATTTAATGGTTCTGCGGCGCCGCTATCTGCTGTATGAAACAT
CGTGATATCGGTGATAGGTGCTCGCGCGTACTGTNGTGCTGTCTCGCGCT
ATGTACTATGATGCATACTGCTCTGCCATGGAGCACGACCGATGTGTGTG
AGCGCGCACGTATATCGTCTCTGTGCTATACATCACTGATCTGTCTCGCC
TGTCGTGTAGTCGCGAATATGCGTCGGAATAGATTATTCTGCTCATACGT
CTACTCGTCACGACGCCATCTGCTCTTTCGCACTTCATATAATCATTGCG
CCTATCGATGTGTACACGCCCGCCGTGATATGGCNCGCGCTCGCATACTA
CGCGTGATAGGCACTGTATATTGGAGTCACTACGATATCTGCGTCTCGCT
CGCGATTATACTGCATCGGTGCTGGTCCGCCGTATANACGTTATATAGTC
GCGCGCGCTNCTACTGTATACGATGGGCTCGTAAGGTATATGTGCTGTGT
GTACGCGCGTGTTTCTCGGTATGTCTGGGTAGATTCGCACCCGTTGTATC
CTCGCGCGTACTGGACGTCGCGTCGAGAGAGCAGTCGGCGGCGTCGCGTT
ATACACTGTCTCCGCGGCGACGTATACTACTACGTGTCGGTGN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCAGCAAAATTCTTTTTCTAAAAGTCCCAGTGAAATGCC
GCTTTTCTTTACAGACATTTTCTTTTCCCTTTTTTTTTTCATTTAAAAAA
TTCATTTTTCCTGGTGTATTTTAGGGTTGCTTTTTTTTTTGACTGTTTCG
TGACTCAGTGTTTGAAAATAAGTTATTAACTAAGCTGAGTTAATGTTTAT
CAGAGGCCAGATGCTCCTCCCATTCCATCACGCTGTTGGAGAAAATCCCA
TTGTAAATGAATGCTTCATGATTACTCAAGTTGCTCAGTTTACTAAGTAT
TCTTGTCACTTTGTGGAATTGATATTAAGAATTATATTCTCCCGATGATT
TTACTAGCACTGCACCCTTGTTTGTATTAGAGTGAGCCGTAGAACAAAAA
TCATCCACTGCTGTTTGGCTAGGGATGATTCACTTTCCAGACATGCAGGA
AGAAAACCTGGTTTGGGAAGGATTTTTTGCTTGAGCACTATACTCTTTTA
CTAAAAGTATTTTTGATATGATATTGATCTGTGTTTGTTATAACAATATT
TCTGTTATTGCGCAAAGACGATTTTGCCAGTACAATCGCCCTTAATGAAA
GTATTTTTTCTAATGCAAATCCTCAACACAACATTCTTTTCGCCTTGCTT
GCTTATTGTTACTTTCTTTTGTAACATGAATTATCTGTCTATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_n12.g1 MSMg01no360_n12.g1 CHROMAT_FILE:
MSMg01no360_n12.g1 PHD_FILE: MSMg01no360_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:42 2005
         (247 letters)



>mm_chr16_67608702_67609347
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttttctaaaagtcccagtgaaatgccgcttttctttacagacattttcttttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attctttttctaaaagtcccagtgaaatgccgcttttctttacagacattttcttttccc 386

                                                                       
Query: 61  ttttttttttcatttaaaaaattcatttttcctggtgtattttagggttgcttttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 ttttttttttcatttaaaaaattcatttttcctggtgtattttagggttgc-tttttttt 327

                                                                       
Query: 121 tgactgtttcgtgactcagtgtttgaaaataagttattaactaagctgagttaatgttta 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgactgtttcatgactcagtgtttgaaaataagttattaactaagctgagttaatgttta 267

                                                                       
Query: 181 tcagaggccagatgctcctcccattccatcacgctgttggagaaaatcccattgtaaatg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccagaggccagatgctcctcccattccatcacgctgttggagaaaatcccattgtaaatg 207

                 
Query: 241 aatgct 246
           ||||||
Sbjct: 206 aatgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space:   151606
Effective search space used:   151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)