Query= MSMg01no361_f09.b1 MSMg01no361_f09.b1 CHROMAT_FILE:
MSMg01no361_f09.b1 PHD_FILE: MSMg01no361_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:21 2005
(706 letters)
>mm_chr16_85162289_85163394
Length = 1106
Score = 1224 bits (633), Expect = 0.0
Identities = 684/716 (95%), Gaps = 24/716 (3%)
Strand = Plus / Minus
Query: 5 gaattctacatggaagtgtgctgtgtgctaatattttaggtaatatatatatatatatat 64
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 719 gaattctacatggaagtgtgctgtgtgctaatattttaggta----------atatatat 670
Query: 65 atatattaccaatatactcttgtatatattaccatgtatatatatacatatata------ 118
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 669 atatattaccaatatactcttgtatatattaccatgcatatatatacatacatatgtgtg 610
Query: 119 --------tgtgtgtgtgtgtcaggtagtgtgtatcactaccctgaggtaaactgaggta 170
|||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 609 tgtgtgtgtgtgtgtgtgtgtcaggtagtgtgcatcactaccctgaggtaaactgaggta 550
Query: 171 tctgaactattcacagtaacatgaaagaacaactgtgaactggggtctgctttgaggcag 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tctgaactattcacagtaacatgaaagaacaactgtgaactggggtctgctttgaggcag 490
Query: 231 ttaaatattacaaatgaaagtggaactaggagaatactaggaatattaatctttgtgtca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttaaatattacaaatgaaagtggaactaggagaatactaggaatattaatctttgtgtca 430
Query: 291 ctagggacaataccttgaatccagatttatccagtacttgataaatacttttggtgagca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctagggacaataccttgaatccagatttatccagtacttgataaatacttttggtgagca 370
Query: 351 ctgtagaaattctacagtgcattgatcaagggttgcatggtttggtgcatggtagacggt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctgtagaaattctacagtgcattgatcaagggttgcatggtttggtgcatggtagacggt 310
Query: 411 ttagcagggagagtgatttctgctcaagctggatctgagtgtccatgcccagaacccatg 470
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttagcagggagagtgatttctgttcaagctggatctgagtgtccatgcccagaacccatg 250
Query: 471 tgaaagcatggcacataactgtgacccccatgctggaagggtaggagaattctggagatg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgaaagcatggcacataactgtgacccccatgctggaagggtaggagaattctggagatg 190
Query: 531 tactggccagcagaaatgggagctacagggttagcgagtgaccctgcctcaaaaataatg 590
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 189 tactggccagcagaaatgggagctacggggtcagcgagtgaccctgcctcaaaaataatg 130
Query: 591 aggacatgatagaagaacatcactgccacctgacattgatctctgatctctacacaagca 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aggacatgatagaagaacatcactgccacctgacattgatctctgatctctacacaagca 70
Query: 651 tacagggnttggtctctctctctctctctctctctctctctctctctctctctctc 706
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tacagggtttgttctctctctctctctctctctctctctctctctctctctctctc 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no361_f09.g1 MSMg01no361_f09.g1 CHROMAT_FILE:
MSMg01no361_f09.g1 PHD_FILE: MSMg01no361_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:21 2005
(520 letters)
>mm_chr16_85002780_85003699
Length = 920
Score = 938 bits (485), Expect = 0.0
Identities = 513/525 (97%), Gaps = 6/525 (1%)
Strand = Plus / Plus
Query: 1 cactaattttaagaacttgccttgtcacagtgggcctcagctagaatcctctcacagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cactaattttaagaacttgccttgtcacagtgggcctcagctagaatcctctcacggcct 260
Query: 61 gctgtagcatcctgttgtttaattaatccttatttaaaactttataacaggagtctgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtagcatcctgttgtttaattaatccttatttaaaactttataacaggagtctgggg 320
Query: 121 agatggttcagtgcacaaggctttgtggaagtgtgaatggagtttgaattcccaggatct 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 agatggttcagtgcacaaggctttctggaagtgtgaatggagtttgaattcccaggatct 380
Query: 181 aagtaccagcggggtggagagggcagccctacagcaacaactgtaaatggagtagaatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtaccagcggggtggagagggcagccctacagcaacaactgtaaatggagtagaatgg 440
Query: 241 aggggaaaagttgatcagcatcagctgccagcctccacatgtgtacccaacatgtgtgta 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggaaaagttggtcagcatcagctgccagcctccacatgtgtacccaacatgtgtgta 500
Query: 301 taaatgcatgtactcacgtgtgggccactgtgcctctaacacattcacatacactgaaaa 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 taaatgcatgtactcacgtgtgggccactgtgcctcaaacacattcacatacactgaaaa 560
Query: 361 taggggaaatgtgataacagcaataattcccaaactgatctatatagagagccattataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggggaaatgtgataacagcaataattcccaaactgatctatatagagagccattataa 620
Query: 421 t-----tatgaatagtattgtcaccttgatagggcctagaatgacctaggagataaactt 475
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctaattatgaatagtattgtcagcttgatagggcctagaatgacctaggagataaactt 680
Query: 476 ttggataagtttatgaggaagtttctagattgagttaactgggat 520
| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 t-ggataagtttataaggaagtttctagattgagttaactgggat 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
