BAC Information

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BAC

Clone NameMSMg01-361H04
Chromosome16 (Build37)
Map Location 14,054,053 - 14,194,986
singlet/doubletdoublet
Overlap gene2900011O08Rik, 4921513D23Rik, Nde1
Upstream geneErcc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7
Downstream geneMyh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361H04.T7 (MSMg01no361_h04.b1)MSMg01-361H04.TJ (MSMg01no361_h04.g1)
ACCAG470373AG470374
length754763
length of high quality
(start - end)		605 (50 - 654)467 (81 - 547)
definitionCHROMAT_FILE: MSMg01no361_h04.b1 PHD_FILE: MSMg01no361_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:30 2005CHROMAT_FILE: MSMg01no361_h04.g1 PHD_FILE: MSMg01no361_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,054,053 - 14,054,635)(14,194,520 - 14,194,986)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAAACAAGGGGTTCTTTGGGCTCATTGTTTCAGGTCTGTG
ATTGGTTGACTTCATTGCTCTGAGCCTGGAACGAAGCAGGATACCTTGGA
GAGGGAGGCAGAAGAGATGGGGTCCTATAACACTTTATGAAAGAATTCCC
CTCAAGATCTAACTTTCTCTTCCTAGGCTCCACCACCTTCTAACAGCACC
ATGCTTGGGACCCATCCTTTAACACATGAGCCTGTGGGAGATTGTAGATA
CAGGGTACAGAATTACTGTTTGGGACTGCAAGTCCTAAGCCCCAAGTTAG
TAAGGCCAGCCCACGAGGAGCTCGCTCTGGAGCCTTGTTTCTGCAAGGAT
TCCTGGGCACCTTTGTAATGGTTCATTTTGATCGCCAACTGGAATGGATT
TAGAATTACCAGGGGACACAGCTCTGGGTATGTCTTAGTCAGGGTTTCTA
TTCCTGCACAAACATCATGACCAAGAAGCAAATTGGGGAGGAAAGGGTTT
ATTTGGCTTACACTTCCATGTTGCTGTTCATCACCAAAGGAAGTCAGGAC
TGGAACTCAAACAGGTCAGAAAGCAGGAGCTGATGCTTGCTTCCCCTGGC
TTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGACATGGT
CCCACCCACTAGGTGCCTTTCCCCCTTGATCACTAATTGAGAAATGCCTT
TCAG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTTCTTAGATGGGCTATC
AGAGAAAAATCCAAATAAGACGTACAGGTCAGGAGCCACAGTCACCAGCA
ACTTTGTTTACATGAAATGAGGAAGTTACATGAATGGGTGCCACAGCCCC
CAACCCACTCCCAACTTTTCCCTGACCTGCCTGACCTTCCAGTTTGGGAG
GAAATCCCGTTTGAAAATTCCCTTCCCTTTCCTGCCTGCCACACCTCAGA
CACACAGTTCACTTCGCCCAAGTGACTTTTTTAGTCATCTGAATTAAAAA
AAGAAACACTGCTCCCAGAGCGAGCGGAGCAGAGCAATCACACTTATTTG
CACCCATGGTCACTTTCACTAATAAAAGGTTGTAAGTCACGAGAAAGGAG
TTGGCTCTTCTGTCCAGCTGTTGTCTTGGCAACTCGTTTAATCCTCTCAG
TGATCCCACTACAAGAAAGTGTACACGAAGCCCAAATGAATTCTGTGTTT
AGAACTGGGCCCTGTGTCCAAGCTGCACAAAGATCGCAGCATCCCCCAAA
CACAAAGTCCATGGTACTTCTGGACCCAAGCCTTTTGAGGGCAGCACATT
CACCCATATTTTAAGTACAAAGTTTTCTTCATCTGTTAAATTGGAATACA
CTATTTTGGCCTACAACAAAGGGTTCACCAGGAACCCTCAATTAAGGCCA
AAATGTCGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_h04.b1 MSMg01no361_h04.b1 CHROMAT_FILE:
MSMg01no361_h04.b1 PHD_FILE: MSMg01no361_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:30 2005
         (605 letters)



>mm_chr16_14053849_14054853
          Length = 1005

 Score = 1120 bits (579), Expect = 0.0
 Identities = 582/583 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataaacaaggggttctttgggctcattgtttcaggtctgtgattggttgacttc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataaacaaagggttctttgggctcattgtttcaggtctgtgattggttgacttc 264

                                                                       
Query: 65  attgctctgagcctggaacgaagcaggataccttggagagggaggcagaagagatggggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgctctgagcctggaacgaagcaggataccttggagagggaggcagaagagatggggt 324

                                                                       
Query: 125 cctataacactttatgaaagaattcccctcaagatctaactttctcttcctaggctccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctataacactttatgaaagaattcccctcaagatctaactttctcttcctaggctccac 384

                                                                       
Query: 185 caccttctaacagcaccatgcttgggacccatcctttaacacatgagcctgtgggagatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caccttctaacagcaccatgcttgggacccatcctttaacacatgagcctgtgggagatt 444

                                                                       
Query: 245 gtagatacagggtacagaattactgtttgggactgcaagtcctaagccccaagttagtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagatacagggtacagaattactgtttgggactgcaagtcctaagccccaagttagtaa 504

                                                                       
Query: 305 ggccagcccacgaggagctcgctctggagccttgtttctgcaaggattcctgggcacctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggccagcccacgaggagctcgctctggagccttgtttctgcaaggattcctgggcacctt 564

                                                                       
Query: 365 tgtaatggttcattttgatcgccaactggaatggatttagaattaccaggggacacagct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtaatggttcattttgatcgccaactggaatggatttagaattaccaggggacacagct 624

                                                                       
Query: 425 ctgggtatgtcttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgggtatgtcttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaaat 684

                                                                       
Query: 485 tggggaggaaagggtttatttggcttacacttccatgttgctgttcatcaccaaaggaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggggaggaaagggtttatttggcttacacttccatgttgctgttcatcaccaaaggaag 744

                                                      
Query: 545 tcaggactggaactcaaacaggtcagaaagcaggagctgatgc 587
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcaggactggaactcaaacaggtcagaaagcaggagctgatgc 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_h04.g1 MSMg01no361_h04.g1 CHROMAT_FILE:
MSMg01no361_h04.g1 PHD_FILE: MSMg01no361_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:30 2005
         (467 letters)



>mm_chr16_14194320_14195186
          Length = 867

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttcttagatgggctatcagagaaaaatccaaataagacgtacaggtcaggagccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aagttcttagatgggctatcagagaaaaatccaaataagacgtacaggtcaggagccaca 608

                                                                       
Query: 61  gtcaccagcaactttgtttacatgaaatgaggaagttacatgaatgggtgccacagcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtcaccagcaactttgtttacatgaaatgaggaagttacatgaatgggtgccacagcccc 548

                                                                       
Query: 121 caacccactcccaacttttccctgacctgcctgaccttccagtttgggaggaaatcccgt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caacccactcccaacctttccctgacctgcctgaccttccagtttgggaggaaatcccgt 488

                                                                       
Query: 181 ttgaaaattcccttccctttcctgcctgccacacctcagacacacagttcacttcgccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttgaaaattcccttccctttcctgcctgccacacctcagacacacagttcacttcgccca 428

                                                                       
Query: 241 agtgacttttttagtcatctgaattaaaaaaagaaacactgctcccagagcgagcggagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtgacttttttagtcatctgaattaaaaaaagaaacactgctcccagagcgagcggagc 368

                                                                       
Query: 301 agagcaatcacacttatttgcacccatggtcactttcactaataaaaggttgtaagtcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agagcaatcacacttatttgcacccatggtcactttcactaataaaaggttgtaagtcac 308

                                                                       
Query: 361 gagaaaggagttggctcttctgtccagctgttgtcttggcaactcgtttaatcctctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagaaaggagttggctcttctgtccagctgttgtcttggcaactcgtttaatcctctcag 248

                                                          
Query: 421 tgatcccactacaagaaagtgtacacgaagcccaaatgaattctgtg 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgatcccactacaagaaagtgtacacgaagcccaaatgaattctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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