BAC Information

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BAC

Clone NameMSMg01-362E24
Chromosome16 (Build37)
Map Location 52,426,029 - 52,426,427
singlet/doubletsinglet
Overlap geneAlcam
Upstream geneCblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362E24.T7 (MSMg01no362_e24.b1)MSMg01-362E24.TJ (MSMg01no362_e24.g1)
ACCAG471027AG471028
length768789
length of high quality
(start - end)		450 (49 - 498)401 (78 - 478)
definitionCHROMAT_FILE: MSMg01no362_e24.b1 PHD_FILE: MSMg01no362_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:38 2005CHROMAT_FILE: MSMg01no362_e24.g1 PHD_FILE: MSMg01no362_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAGGATAGAATATCAACTGGGCAAGAAGCACTTAAAGAAAT
GTTCAGTATCTTTAGCCATCAGGGAAATGCAAATAAAAAATTACTCTGAG
ATTTCATCTTATACCTGGTTAAAATCAAAAACACAAGTGAAAGCTCATGC
TGATGAAGATGTGGAGCCAGGGAAGCAGCCCTCCATTGCTGGTAAGAATG
CAAACAAGTACAACCACTTTGGAAATCAATTTGGTGGTTTCTCATAAAAT
TGACAATTTATGTTCCTCAAGACCCAGTTATACCATTCCTGGTTATATAC
CCAAAGGACAATCCATTCTACCACAAGGGCACTTGCTCAAGTATGTTCAT
AGCAGCTTTATTAGTAATAGCCAGAAACGGGAAACAACCTAGAAATCCCT
CAACCAAAGAATGGGTAAAGAAAATGTGGCACATGTAGACAATGGAGTAT
TACAGAGGTGTTAAAAACAACAAAATCATGAAATTTGCAGGCCGAATGGA
TGAAATTAGAAAAAACACCCCCACCAAAACCAAAATCAAAAACATAAAAC
AAAAACCAGAATATCCTGAGGAAACCCCCACCCAGATTCCCCTATGGGGG
AATTTTTTTTTTAACACTGGAAATTTTAAGGGGGACGGGGGCCTATAAAA
AAAAAATTGTTTTTAACAAAAAATTTTTTGGACCCGAAAAGGCAAAATTT
TTAACAACTGTTGGTTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTATCAGTGTGACAAAGTGCCTG
ACATACTTCTCAACAGAAAAATTCCCATTGAGTCTGAAGGAAGACATTGG
AAAAGCTAAGTGTAGATTCTTAATCACCTTCTGTGTAAATCTTGTACTTG
AGATGGGGAAATCTGGTAAAGTCCAGAGTTTTATTTAGTCACTTGCTTTT
CATGACATTTGTCATTACAGAATCACATGGTCATTACTATTTCTCTATTT
CTCTCATTTAAGTAGTGTTTCTCAGTCATAGGTACACTACAGAGTCTGGT
CCAAAGCTTCCAAAAAGTATAGATGGCAGTCCCAGGCCTGTGAAGTCAGT
GACTAGGATCTTTCTTCTATTTCTAGGCATACTTCCTGGAACCCACAAAG
TAAAAGGAGAGAGCCAAGTCTAATGTTGTCCTGTGGACCTTTGTATGTGT
CCCATAGCACAAACACACTCACATATACATACTCACACTCACACATACAC
TCTTATGTACACATACATATTCCCNCAAACCCCGATGGGGTAACACACAC
TCACACACATTCCCTCACATCACACAACTTTTCATGGGAGTTTTTAGGCT
TAACAAAAAACCACCTTTTCCTAACGGGGGGGATTCCCCCCGCTCTTATT
ATCCGAAATTTTTATAAGGGGTCCGCTATGCCCCTCCCCGGGGAAACATC
TTTCCCTTTTTTTTTTCCGGGCAACAAAAAAATGTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_e24.g1 MSMg01no362_e24.g1 CHROMAT_FILE:
MSMg01no362_e24.g1 PHD_FILE: MSMg01no362_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:38 2005
         (401 letters)



>mm_chr16_52425826_52426627
          Length = 802

 Score =  733 bits (379), Expect = 0.0
 Identities = 394/399 (98%), Gaps = 1/399 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   tcagtgtgacaaagtgcctgacatacttctcaacagaaaaattcccattgagtctgaagg 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcagtgtgacaaagtgcttgacatacttctcaacagaaaaattcccattgagtctgaagg 263

                                                                       
Query: 64  aagacattggaaaagctaagtgtagattcttaatcaccttctgtgtaaatcttgtacttg 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagacattggaaacgctaagtgtagattcttaatcaccttctgtgtaaatcttgtacttg 323

                                                                       
Query: 124 agatggggaaatctggtaaagt-ccagagttttatttagtcacttgcttttcatgacatt 182
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 agatggggaaatctggtaaagttccagagttttatttagtcacttgcttttcatgacatt 383

                                                                       
Query: 183 tgtcattacagaatcacatggtcattactatttctctatttctctcatttaagtagtgtt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtcattacagaatcacatggtcattactatttctctatttctctcatttaagtagtgtt 443

                                                                       
Query: 243 tctcagtcataggtacactacagagtctggtccaaagcttccaaaaagtatagatggcag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctcagtcataggtacactacagagtctggtccaaagcttccaaaaagtatagatggcag 503

                                                                       
Query: 303 tcccaggcctgtgaagtcagtgactaggatctttcttctatttctaggcatacttcctgg 362
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 tcccaggcctgtgaagtcagtgactaggatctttcttctaattctaggcatacttcctgg 563

                                                  
Query: 363 aacccacaaagtaaaaggagagagccaagtctaatgttg 401
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacccacaaagtaaaaggagagagccaagtctaatgttg 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 802
Length adjustment: 9
Effective length of query: 392
Effective length of database: 793
Effective search space:   310856
Effective search space used:   310856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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